Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene

Autores
Costa, Carolina L. N.; Perez, Sergio Ivan; Louvise, José; Tonhatti, Carlos H.; Clemente Carvalho, Rute B. G.; Petryna, Ana Mabel; dos Reis, S. F.
Año de publicación
2019
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Demographic changes during the late Pleistocene-Holocene left signatures in the DNA of contemporary populations. These signatures reveal demographic phenomena like the increase or decrease in effective population size. In this paper we searched for signatures of demographic change in the DNA of the Neotropical freshwater fish Poecilia vivipara . Also, we investigated whether demographic changes are correlated with palaeoclimatic events of the late Pleistocene-Holocene, in particular, if changes in effective population size are correlated with expansion and contraction of available habitats, induced by global ice-volume changes and sea-level fluctuations. We used Bayesian Skyline Plot (BSP) analysis with sequences from the mitochondrial gene cytochrome b to estimate the ancestral demography of the Neotropical freshwater fish P. vivipara . To test the assumptions of neutrality and absence of population structure we used Tajima?s D and Spatial Analysis of Molecular Variance (SAMOVA), respectively. Effective population size of P. vivipara remained stable until 75,000 years ago, increased by 10-fold reaching a maximum at approximately 25,000 years ago, then suddenly declined at the Pleistocene-
Holocene boundary. Variation in effective population size in P. vivipara correlates with expansion and contraction of habitats induced by sea-level fluctuations, caused by the advance and retreat of ice sheets during the Last Glacial Maximum (LGM).
Fil: Costa, Carolina L. N.. Universidade Estadual de Campinas; Brasil
Fil: Perez, Sergio Ivan. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Departamento Científico de Antropología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina
Fil: Louvise, José. Faculdade Do Vale Do Jaguaribe; Brasil
Fil: Tonhatti, Carlos H.. Universidade Estadual de Campinas; Brasil
Fil: Clemente Carvalho, Rute B. G.. Queens University. Department Of Biology; Canadá
Fil: Petryna, Ana Mabel. Universidade Federal do Rio de Janeiro; Brasil
Fil: dos Reis, S. F.. Universidade Estadual de Campinas; Brasil
Materia
ANCESTRAL POPULATION DYNAMICS
COALESCENCE
BAYESIAN SKYLINE PLOT
MITOCHONDRIAL DNA
LAST GLACIAL MAXIMUM
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/128322
Acceder
id CONICETDig_98a1fbbed411ec9c0a461c2123706d50
oai_identifier_str oai:ri.conicet.gov.ar:11336/128322
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-HoloceneCosta, Carolina L. N.Perez, Sergio IvanLouvise, JoséTonhatti, Carlos H.Clemente Carvalho, Rute B. G.Petryna, Ana Mabeldos Reis, S. F.ANCESTRAL POPULATION DYNAMICSCOALESCENCEBAYESIAN SKYLINE PLOTMITOCHONDRIAL DNALAST GLACIAL MAXIMUMhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Demographic changes during the late Pleistocene-Holocene left signatures in the DNA of contemporary populations. These signatures reveal demographic phenomena like the increase or decrease in effective population size. In this paper we searched for signatures of demographic change in the DNA of the Neotropical freshwater fish Poecilia vivipara . Also, we investigated whether demographic changes are correlated with palaeoclimatic events of the late Pleistocene-Holocene, in particular, if changes in effective population size are correlated with expansion and contraction of available habitats, induced by global ice-volume changes and sea-level fluctuations. We used Bayesian Skyline Plot (BSP) analysis with sequences from the mitochondrial gene cytochrome b to estimate the ancestral demography of the Neotropical freshwater fish P. vivipara . To test the assumptions of neutrality and absence of population structure we used Tajima?s D and Spatial Analysis of Molecular Variance (SAMOVA), respectively. Effective population size of P. vivipara remained stable until 75,000 years ago, increased by 10-fold reaching a maximum at approximately 25,000 years ago, then suddenly declined at the Pleistocene-<br />Holocene boundary. Variation in effective population size in P. vivipara correlates with expansion and contraction of habitats induced by sea-level fluctuations, caused by the advance and retreat of ice sheets during the Last Glacial Maximum (LGM).Fil: Costa, Carolina L. N.. Universidade Estadual de Campinas; BrasilFil: Perez, Sergio Ivan. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Departamento Científico de Antropología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; ArgentinaFil: Louvise, José. Faculdade Do Vale Do Jaguaribe; BrasilFil: Tonhatti, Carlos H.. Universidade Estadual de Campinas; BrasilFil: Clemente Carvalho, Rute B. G.. Queens University. Department Of Biology; CanadáFil: Petryna, Ana Mabel. Universidade Federal do Rio de Janeiro; BrasilFil: dos Reis, S. F.. Universidade Estadual de Campinas; BrasilScientific Research Publishing2019-08info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/128322Costa, Carolina L. N.; Perez, Sergio Ivan; Louvise, José; Tonhatti, Carlos H.; Clemente Carvalho, Rute B. G.; et al.; Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene; Scientific Research Publishing; Open Journal of Statistics; 09; 04; 8-2019; 470-4832161-718X2161-7198CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/http://www.scirp.org/journal/doi.aspx?DOI=10.4236/ojs.2019.94032info:eu-repo/semantics/altIdentifier/doi/10.4236/ojs.2019.94032info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T14:27:09Zoai:ri.conicet.gov.ar:11336/128322instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 14:27:09.586CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene
title Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene
spellingShingle Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene
Costa, Carolina L. N.
ANCESTRAL POPULATION DYNAMICS
COALESCENCE
BAYESIAN SKYLINE PLOT
MITOCHONDRIAL DNA
LAST GLACIAL MAXIMUM
title_short Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene
title_full Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene
title_fullStr Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene
title_full_unstemmed Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene
title_sort Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene
dc.creator.none.fl_str_mv Costa, Carolina L. N.
Perez, Sergio Ivan
Louvise, José
Tonhatti, Carlos H.
Clemente Carvalho, Rute B. G.
Petryna, Ana Mabel
dos Reis, S. F.
author Costa, Carolina L. N.
author_facet Costa, Carolina L. N.
Perez, Sergio Ivan
Louvise, José
Tonhatti, Carlos H.
Clemente Carvalho, Rute B. G.
Petryna, Ana Mabel
dos Reis, S. F.
author_role author
author2 Perez, Sergio Ivan
Louvise, José
Tonhatti, Carlos H.
Clemente Carvalho, Rute B. G.
Petryna, Ana Mabel
dos Reis, S. F.
author2_role author
author
author
author
author
author
dc.subject.none.fl_str_mv ANCESTRAL POPULATION DYNAMICS
COALESCENCE
BAYESIAN SKYLINE PLOT
MITOCHONDRIAL DNA
LAST GLACIAL MAXIMUM
topic ANCESTRAL POPULATION DYNAMICS
COALESCENCE
BAYESIAN SKYLINE PLOT
MITOCHONDRIAL DNA
LAST GLACIAL MAXIMUM
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Demographic changes during the late Pleistocene-Holocene left signatures in the DNA of contemporary populations. These signatures reveal demographic phenomena like the increase or decrease in effective population size. In this paper we searched for signatures of demographic change in the DNA of the Neotropical freshwater fish Poecilia vivipara . Also, we investigated whether demographic changes are correlated with palaeoclimatic events of the late Pleistocene-Holocene, in particular, if changes in effective population size are correlated with expansion and contraction of available habitats, induced by global ice-volume changes and sea-level fluctuations. We used Bayesian Skyline Plot (BSP) analysis with sequences from the mitochondrial gene cytochrome b to estimate the ancestral demography of the Neotropical freshwater fish P. vivipara . To test the assumptions of neutrality and absence of population structure we used Tajima?s D and Spatial Analysis of Molecular Variance (SAMOVA), respectively. Effective population size of P. vivipara remained stable until 75,000 years ago, increased by 10-fold reaching a maximum at approximately 25,000 years ago, then suddenly declined at the Pleistocene-<br />Holocene boundary. Variation in effective population size in P. vivipara correlates with expansion and contraction of habitats induced by sea-level fluctuations, caused by the advance and retreat of ice sheets during the Last Glacial Maximum (LGM).
Fil: Costa, Carolina L. N.. Universidade Estadual de Campinas; Brasil
Fil: Perez, Sergio Ivan. Universidad Nacional de La Plata. Facultad de Ciencias Naturales y Museo. Departamento Científico de Antropología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina
Fil: Louvise, José. Faculdade Do Vale Do Jaguaribe; Brasil
Fil: Tonhatti, Carlos H.. Universidade Estadual de Campinas; Brasil
Fil: Clemente Carvalho, Rute B. G.. Queens University. Department Of Biology; Canadá
Fil: Petryna, Ana Mabel. Universidade Federal do Rio de Janeiro; Brasil
Fil: dos Reis, S. F.. Universidade Estadual de Campinas; Brasil
description Demographic changes during the late Pleistocene-Holocene left signatures in the DNA of contemporary populations. These signatures reveal demographic phenomena like the increase or decrease in effective population size. In this paper we searched for signatures of demographic change in the DNA of the Neotropical freshwater fish Poecilia vivipara . Also, we investigated whether demographic changes are correlated with palaeoclimatic events of the late Pleistocene-Holocene, in particular, if changes in effective population size are correlated with expansion and contraction of available habitats, induced by global ice-volume changes and sea-level fluctuations. We used Bayesian Skyline Plot (BSP) analysis with sequences from the mitochondrial gene cytochrome b to estimate the ancestral demography of the Neotropical freshwater fish P. vivipara . To test the assumptions of neutrality and absence of population structure we used Tajima?s D and Spatial Analysis of Molecular Variance (SAMOVA), respectively. Effective population size of P. vivipara remained stable until 75,000 years ago, increased by 10-fold reaching a maximum at approximately 25,000 years ago, then suddenly declined at the Pleistocene-<br />Holocene boundary. Variation in effective population size in P. vivipara correlates with expansion and contraction of habitats induced by sea-level fluctuations, caused by the advance and retreat of ice sheets during the Last Glacial Maximum (LGM).
publishDate 2019
dc.date.none.fl_str_mv 2019-08
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/128322
Costa, Carolina L. N.; Perez, Sergio Ivan; Louvise, José; Tonhatti, Carlos H.; Clemente Carvalho, Rute B. G.; et al.; Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene; Scientific Research Publishing; Open Journal of Statistics; 09; 04; 8-2019; 470-483
2161-718X
2161-7198
CONICET Digital
CONICET
url http://hdl.handle.net/11336/128322
identifier_str_mv Costa, Carolina L. N.; Perez, Sergio Ivan; Louvise, José; Tonhatti, Carlos H.; Clemente Carvalho, Rute B. G.; et al.; Demographic expansion and contraction in a neotropical fish during the Late Pleistocene-Holocene; Scientific Research Publishing; Open Journal of Statistics; 09; 04; 8-2019; 470-483
2161-718X
2161-7198
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/http://www.scirp.org/journal/doi.aspx?DOI=10.4236/ojs.2019.94032
info:eu-repo/semantics/altIdentifier/doi/10.4236/ojs.2019.94032
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Scientific Research Publishing
publisher.none.fl_str_mv Scientific Research Publishing
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1846082724705599488
score 13.22299

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