Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine

Autores
Díaz Riquelme, José; Lijavetzky, Diego Claudio; Martínez Zapater, José M.; Carmona, María José
Año de publicación
2009
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
MIKCC-type MADS box genes encode transcription factors that play crucial roles in plant growth and development. Analysis of the grapevine (Vitis vinifera) genome revealed up to 38MIKCC-type genes.We report here a complete analysis of this gene family regarding their phylogenetic relationships with homologous genes identified in other sequenced dicot genomes, their genome location, and gene structure and expression. The grapevine genes cluster in 13 subfamilies with their Arabidopsis (Arabidopsis thaliana) and poplar (Populus trichocarpa) counterparts. The lack of recent whole genome duplications in grapevine allows assigning the gene diversification processes observed within each subfamily either to an ancestral polyploidization event predating the divergence of those three species or to later duplication events within each lineage. Expression profiles of MIKCC-type genes in vegetative and reproductive organs as well as during flower and tendril development show conserved expression domains for specific subfamilies but also reflect characteristic features of grapevine development. Expression analyses in latent buds and during flower development reveal common features previously described in other plant systems as well as possible new roles for members of some subfamilies during flowering transition. The analysis of MIKCC-type genes in grapevine helps in understanding the origin of gene diversification within each subfamily and provides the basis for functional analyses to uncover the role of these MADS box genes in grapevine development.
Fil: Díaz Riquelme, José. Consejo Superior de Investigaciones Cientificas. Center For Research In Agricultural Genomics; España
Fil: Lijavetzky, Diego Claudio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; Argentina. Consejo Superior de Investigaciones Cientificas. Center For Research In Agricultural Genomics; España
Fil: Martínez Zapater, José M.. Consejo Superior de Investigaciones Cientificas. Center For Research In Agricultural Genomics; España
Fil: Carmona, María José. Universidad Politécnica de Madrid; España
Materia
MADS Box
Grapevine
Genome analysis
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/106857
Acceder
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network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Genome-Wide Analysis of MIKC C -Type MADS Box Genes in GrapevineDíaz Riquelme, JoséLijavetzky, Diego ClaudioMartínez Zapater, José M.Carmona, María JoséMADS BoxGrapevineGenome analysishttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1MIKCC-type MADS box genes encode transcription factors that play crucial roles in plant growth and development. Analysis of the grapevine (Vitis vinifera) genome revealed up to 38MIKCC-type genes.We report here a complete analysis of this gene family regarding their phylogenetic relationships with homologous genes identified in other sequenced dicot genomes, their genome location, and gene structure and expression. The grapevine genes cluster in 13 subfamilies with their Arabidopsis (Arabidopsis thaliana) and poplar (Populus trichocarpa) counterparts. The lack of recent whole genome duplications in grapevine allows assigning the gene diversification processes observed within each subfamily either to an ancestral polyploidization event predating the divergence of those three species or to later duplication events within each lineage. Expression profiles of MIKCC-type genes in vegetative and reproductive organs as well as during flower and tendril development show conserved expression domains for specific subfamilies but also reflect characteristic features of grapevine development. Expression analyses in latent buds and during flower development reveal common features previously described in other plant systems as well as possible new roles for members of some subfamilies during flowering transition. The analysis of MIKCC-type genes in grapevine helps in understanding the origin of gene diversification within each subfamily and provides the basis for functional analyses to uncover the role of these MADS box genes in grapevine development.Fil: Díaz Riquelme, José. Consejo Superior de Investigaciones Cientificas. Center For Research In Agricultural Genomics; EspañaFil: Lijavetzky, Diego Claudio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; Argentina. Consejo Superior de Investigaciones Cientificas. Center For Research In Agricultural Genomics; EspañaFil: Martínez Zapater, José M.. Consejo Superior de Investigaciones Cientificas. Center For Research In Agricultural Genomics; EspañaFil: Carmona, María José. Universidad Politécnica de Madrid; EspañaAmerican Society of Plant Biologist2009-01info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/106857Díaz Riquelme, José; Lijavetzky, Diego Claudio; Martínez Zapater, José M.; Carmona, María José; Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine; American Society of Plant Biologist; Plant Physiology; 149; 1; 1-2009; 354-3690032-0889CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1104/pp.108.131052info:eu-repo/semantics/altIdentifier/url/http://www.plantphysiol.org/content/149/1/354info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:52:14Zoai:ri.conicet.gov.ar:11336/106857instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:52:14.372CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine
title Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine
spellingShingle Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine
Díaz Riquelme, José
MADS Box
Grapevine
Genome analysis
title_short Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine
title_full Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine
title_fullStr Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine
title_full_unstemmed Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine
title_sort Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine
dc.creator.none.fl_str_mv Díaz Riquelme, José
Lijavetzky, Diego Claudio
Martínez Zapater, José M.
Carmona, María José
author Díaz Riquelme, José
author_facet Díaz Riquelme, José
Lijavetzky, Diego Claudio
Martínez Zapater, José M.
Carmona, María José
author_role author
author2 Lijavetzky, Diego Claudio
Martínez Zapater, José M.
Carmona, María José
author2_role author
author
author
dc.subject.none.fl_str_mv MADS Box
Grapevine
Genome analysis
topic MADS Box
Grapevine
Genome analysis
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv MIKCC-type MADS box genes encode transcription factors that play crucial roles in plant growth and development. Analysis of the grapevine (Vitis vinifera) genome revealed up to 38MIKCC-type genes.We report here a complete analysis of this gene family regarding their phylogenetic relationships with homologous genes identified in other sequenced dicot genomes, their genome location, and gene structure and expression. The grapevine genes cluster in 13 subfamilies with their Arabidopsis (Arabidopsis thaliana) and poplar (Populus trichocarpa) counterparts. The lack of recent whole genome duplications in grapevine allows assigning the gene diversification processes observed within each subfamily either to an ancestral polyploidization event predating the divergence of those three species or to later duplication events within each lineage. Expression profiles of MIKCC-type genes in vegetative and reproductive organs as well as during flower and tendril development show conserved expression domains for specific subfamilies but also reflect characteristic features of grapevine development. Expression analyses in latent buds and during flower development reveal common features previously described in other plant systems as well as possible new roles for members of some subfamilies during flowering transition. The analysis of MIKCC-type genes in grapevine helps in understanding the origin of gene diversification within each subfamily and provides the basis for functional analyses to uncover the role of these MADS box genes in grapevine development.
Fil: Díaz Riquelme, José. Consejo Superior de Investigaciones Cientificas. Center For Research In Agricultural Genomics; España
Fil: Lijavetzky, Diego Claudio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mendoza. Instituto de Biología Agrícola de Mendoza. Universidad Nacional de Cuyo. Facultad de Ciencias Agrarias. Instituto de Biología Agrícola de Mendoza; Argentina. Consejo Superior de Investigaciones Cientificas. Center For Research In Agricultural Genomics; España
Fil: Martínez Zapater, José M.. Consejo Superior de Investigaciones Cientificas. Center For Research In Agricultural Genomics; España
Fil: Carmona, María José. Universidad Politécnica de Madrid; España
description MIKCC-type MADS box genes encode transcription factors that play crucial roles in plant growth and development. Analysis of the grapevine (Vitis vinifera) genome revealed up to 38MIKCC-type genes.We report here a complete analysis of this gene family regarding their phylogenetic relationships with homologous genes identified in other sequenced dicot genomes, their genome location, and gene structure and expression. The grapevine genes cluster in 13 subfamilies with their Arabidopsis (Arabidopsis thaliana) and poplar (Populus trichocarpa) counterparts. The lack of recent whole genome duplications in grapevine allows assigning the gene diversification processes observed within each subfamily either to an ancestral polyploidization event predating the divergence of those three species or to later duplication events within each lineage. Expression profiles of MIKCC-type genes in vegetative and reproductive organs as well as during flower and tendril development show conserved expression domains for specific subfamilies but also reflect characteristic features of grapevine development. Expression analyses in latent buds and during flower development reveal common features previously described in other plant systems as well as possible new roles for members of some subfamilies during flowering transition. The analysis of MIKCC-type genes in grapevine helps in understanding the origin of gene diversification within each subfamily and provides the basis for functional analyses to uncover the role of these MADS box genes in grapevine development.
publishDate 2009
dc.date.none.fl_str_mv 2009-01
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/106857
Díaz Riquelme, José; Lijavetzky, Diego Claudio; Martínez Zapater, José M.; Carmona, María José; Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine; American Society of Plant Biologist; Plant Physiology; 149; 1; 1-2009; 354-369
0032-0889
CONICET Digital
CONICET
url http://hdl.handle.net/11336/106857
identifier_str_mv Díaz Riquelme, José; Lijavetzky, Diego Claudio; Martínez Zapater, José M.; Carmona, María José; Genome-Wide Analysis of MIKC C -Type MADS Box Genes in Grapevine; American Society of Plant Biologist; Plant Physiology; 149; 1; 1-2009; 354-369
0032-0889
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1104/pp.108.131052
info:eu-repo/semantics/altIdentifier/url/http://www.plantphysiol.org/content/149/1/354
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv American Society of Plant Biologist
publisher.none.fl_str_mv American Society of Plant Biologist
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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