Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification

Autores
Sterli, Juliana; Pol, Diego; Laurin, M.
Año de publicación
2012
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Methods improving the performance of molecular dating of divergence time of clades have improved dramatically in recent years. The calibration of molecular dating using the first appearance of a clade in the fossil record is a crucial step towards inferring the minimal diversification time of various groups and the choice of extinct taxa can strongly influence the molecular dates. Here, we evaluate the uncertainty on the phylogenetic position of extinct taxa through non-parametric bootstrapping. The recognition of phylogenetic uncertainty resulted in the definition of the Bootstrap Uncertainty Range (BUR) for the age of first appearance of a given clade. The BUR is calculated as the interval of geological time in which the diversification of a given clade can be inferred to have occurred, based on the temporal information of the fossil record and the topologies of the bootstrap trees. Divergence times based on BUR analyses were calculated for three clades of turtles: Testudines, Pleurodira and Cryptodira. This resulted in extensive uncertainty ranges of topology-dependent minimal divergence dates for these clades.
Fil: Sterli, Juliana. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Nacional Patagónico; Argentina
Fil: Pol, Diego. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Nacional Patagónico; Argentina
Fil: Laurin, M.. Museum National d Histoire Naturelle. Batiment de Geologie; Francia
Materia
Tree Calibration
Phylogeny
Phylogenetic Uncertainty
Paleontological Dating
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/3500
Acceder
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network_name_str CONICET Digital (CONICET)
spelling Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversificationSterli, JulianaPol, DiegoLaurin, M.Tree CalibrationPhylogenyPhylogenetic UncertaintyPaleontological Datinghttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Methods improving the performance of molecular dating of divergence time of clades have improved dramatically in recent years. The calibration of molecular dating using the first appearance of a clade in the fossil record is a crucial step towards inferring the minimal diversification time of various groups and the choice of extinct taxa can strongly influence the molecular dates. Here, we evaluate the uncertainty on the phylogenetic position of extinct taxa through non-parametric bootstrapping. The recognition of phylogenetic uncertainty resulted in the definition of the Bootstrap Uncertainty Range (BUR) for the age of first appearance of a given clade. The BUR is calculated as the interval of geological time in which the diversification of a given clade can be inferred to have occurred, based on the temporal information of the fossil record and the topologies of the bootstrap trees. Divergence times based on BUR analyses were calculated for three clades of turtles: Testudines, Pleurodira and Cryptodira. This resulted in extensive uncertainty ranges of topology-dependent minimal divergence dates for these clades.Fil: Sterli, Juliana. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Nacional Patagónico; ArgentinaFil: Pol, Diego. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Nacional Patagónico; ArgentinaFil: Laurin, M.. Museum National d Histoire Naturelle. Batiment de Geologie; FranciaWiley2012-09-10info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/3500Sterli, Juliana; Pol, Diego; Laurin, M.; Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification; Wiley; Cladistics; 29; 3; 10-9-2012; 233-2460748-3007enginfo:eu-repo/semantics/altIdentifier/url/http://onlinelibrary.wiley.com/doi/10.1111/j.1096-0031.2012.00425.x/abstractinfo:eu-repo/semantics/altIdentifier/doi/10.1111/j.1096-0031.2012.00425.xinfo:eu-repo/semantics/altIdentifier/issn/0748-3007info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:34:59Zoai:ri.conicet.gov.ar:11336/3500instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:34:59.478CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
title Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
spellingShingle Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
Sterli, Juliana
Tree Calibration
Phylogeny
Phylogenetic Uncertainty
Paleontological Dating
title_short Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
title_full Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
title_fullStr Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
title_full_unstemmed Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
title_sort Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification
dc.creator.none.fl_str_mv Sterli, Juliana
Pol, Diego
Laurin, M.
author Sterli, Juliana
author_facet Sterli, Juliana
Pol, Diego
Laurin, M.
author_role author
author2 Pol, Diego
Laurin, M.
author2_role author
author
dc.subject.none.fl_str_mv Tree Calibration
Phylogeny
Phylogenetic Uncertainty
Paleontological Dating
topic Tree Calibration
Phylogeny
Phylogenetic Uncertainty
Paleontological Dating
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Methods improving the performance of molecular dating of divergence time of clades have improved dramatically in recent years. The calibration of molecular dating using the first appearance of a clade in the fossil record is a crucial step towards inferring the minimal diversification time of various groups and the choice of extinct taxa can strongly influence the molecular dates. Here, we evaluate the uncertainty on the phylogenetic position of extinct taxa through non-parametric bootstrapping. The recognition of phylogenetic uncertainty resulted in the definition of the Bootstrap Uncertainty Range (BUR) for the age of first appearance of a given clade. The BUR is calculated as the interval of geological time in which the diversification of a given clade can be inferred to have occurred, based on the temporal information of the fossil record and the topologies of the bootstrap trees. Divergence times based on BUR analyses were calculated for three clades of turtles: Testudines, Pleurodira and Cryptodira. This resulted in extensive uncertainty ranges of topology-dependent minimal divergence dates for these clades.
Fil: Sterli, Juliana. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Nacional Patagónico; Argentina
Fil: Pol, Diego. Museo Paleontológico Egidio Feruglio; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Nacional Patagónico; Argentina
Fil: Laurin, M.. Museum National d Histoire Naturelle. Batiment de Geologie; Francia
description Methods improving the performance of molecular dating of divergence time of clades have improved dramatically in recent years. The calibration of molecular dating using the first appearance of a clade in the fossil record is a crucial step towards inferring the minimal diversification time of various groups and the choice of extinct taxa can strongly influence the molecular dates. Here, we evaluate the uncertainty on the phylogenetic position of extinct taxa through non-parametric bootstrapping. The recognition of phylogenetic uncertainty resulted in the definition of the Bootstrap Uncertainty Range (BUR) for the age of first appearance of a given clade. The BUR is calculated as the interval of geological time in which the diversification of a given clade can be inferred to have occurred, based on the temporal information of the fossil record and the topologies of the bootstrap trees. Divergence times based on BUR analyses were calculated for three clades of turtles: Testudines, Pleurodira and Cryptodira. This resulted in extensive uncertainty ranges of topology-dependent minimal divergence dates for these clades.
publishDate 2012
dc.date.none.fl_str_mv 2012-09-10
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/3500
Sterli, Juliana; Pol, Diego; Laurin, M.; Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification; Wiley; Cladistics; 29; 3; 10-9-2012; 233-246
0748-3007
url http://hdl.handle.net/11336/3500
identifier_str_mv Sterli, Juliana; Pol, Diego; Laurin, M.; Incorporating phylogenetic uncertainty on phylogeny-based palaeontological dating and the timing of turtle diversification; Wiley; Cladistics; 29; 3; 10-9-2012; 233-246
0748-3007
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/http://onlinelibrary.wiley.com/doi/10.1111/j.1096-0031.2012.00425.x/abstract
info:eu-repo/semantics/altIdentifier/doi/10.1111/j.1096-0031.2012.00425.x
info:eu-repo/semantics/altIdentifier/issn/0748-3007
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv Wiley
publisher.none.fl_str_mv Wiley
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.070432

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