Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length

Autores
Gabay, Gilad; Zhang, Junli; Burguener, German Federico; Howell, Tyson; Wang, Hanchao; Fahima, Tzion; Lukaszewski, Adam; Moriconi, Jorge Ignacio; Santa Maria, Guillermo Esteban; Dubcovsky, Jorge
Año de publicación
2020
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Good understanding of the genes controlling root development is required to engineer root systems better adapted to different soil types. In wheat (Triticum aestivum L.), the 1RS.1BL wheat–rye (Secale cereale L.) translocation has been associated with improved drought tolerance and a large root system. However, an isogenic line carrying an interstitial segment from wheat chromosome arm 1BS in the distal region of the 1RS arm (1RSRW) showed reduced grain yield and shorter roots both in the field and in hydroponic cultures relative to isogenic lines with the complete 1RS arm. In this study, we used exome capture to characterize 1RSRW and its parental lines T-9 and 1B+40. We show that 1RSRW has a 7.0 Mb duplicated 1RS region and a 4.8 Mb 1BS insertion colinear with the 1RS duplication, resulting in triplicated genes. Lines homozygous for 1RSRW have short seminal roots, while lines heterozygous for this chromosome have roots of intermediate length. By contrast, near-isogenic lines carrying only the 1BS distal region or the 1RS-1BS duplication have long seminal roots similar to 1RS, suggesting a limited effect of the 1BS genes. These results suggest that the dosage of duplicated 1RS genes is critical for seminal root length. An induced deletion encompassing 38 orthologous wheat and rye duplicated genes restored root length and confirmed the importance of gene dosage in the short-root phenotype. We explored the expression profiles and functional annotation of these genes and discuss their potential as candidate genes for the regulation of seminal root length in wheat.
Fil: Gabay, Gilad. University of California at Davis; Estados Unidos
Fil: Zhang, Junli. University of California at Davis; Estados Unidos
Fil: Burguener, German Federico. University of California at Davis; Estados Unidos
Fil: Howell, Tyson. University of California at Davis; Estados Unidos
Fil: Wang, Hanchao. University Of Haifa; Israel
Fil: Fahima, Tzion. University of California at Davis; Estados Unidos
Fil: Lukaszewski, Adam. University of California at Davis; Estados Unidos
Fil: Moriconi, Jorge Ignacio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); Argentina
Fil: Santa Maria, Guillermo Esteban. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); Argentina
Fil: Dubcovsky, Jorge. University of California at Davis; Estados Unidos
Materia
Wheat
Rye
1BS
1RS translocation
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/169779

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network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root lengthGabay, GiladZhang, JunliBurguener, German FedericoHowell, TysonWang, HanchaoFahima, TzionLukaszewski, AdamMoriconi, Jorge IgnacioSanta Maria, Guillermo EstebanDubcovsky, JorgeWheatRye1BS1RS translocationhttps://purl.org/becyt/ford/4.4https://purl.org/becyt/ford/4Good understanding of the genes controlling root development is required to engineer root systems better adapted to different soil types. In wheat (Triticum aestivum L.), the 1RS.1BL wheat–rye (Secale cereale L.) translocation has been associated with improved drought tolerance and a large root system. However, an isogenic line carrying an interstitial segment from wheat chromosome arm 1BS in the distal region of the 1RS arm (1RSRW) showed reduced grain yield and shorter roots both in the field and in hydroponic cultures relative to isogenic lines with the complete 1RS arm. In this study, we used exome capture to characterize 1RSRW and its parental lines T-9 and 1B+40. We show that 1RSRW has a 7.0 Mb duplicated 1RS region and a 4.8 Mb 1BS insertion colinear with the 1RS duplication, resulting in triplicated genes. Lines homozygous for 1RSRW have short seminal roots, while lines heterozygous for this chromosome have roots of intermediate length. By contrast, near-isogenic lines carrying only the 1BS distal region or the 1RS-1BS duplication have long seminal roots similar to 1RS, suggesting a limited effect of the 1BS genes. These results suggest that the dosage of duplicated 1RS genes is critical for seminal root length. An induced deletion encompassing 38 orthologous wheat and rye duplicated genes restored root length and confirmed the importance of gene dosage in the short-root phenotype. We explored the expression profiles and functional annotation of these genes and discuss their potential as candidate genes for the regulation of seminal root length in wheat.Fil: Gabay, Gilad. University of California at Davis; Estados UnidosFil: Zhang, Junli. University of California at Davis; Estados UnidosFil: Burguener, German Federico. University of California at Davis; Estados UnidosFil: Howell, Tyson. University of California at Davis; Estados UnidosFil: Wang, Hanchao. University Of Haifa; IsraelFil: Fahima, Tzion. University of California at Davis; Estados UnidosFil: Lukaszewski, Adam. University of California at Davis; Estados UnidosFil: Moriconi, Jorge Ignacio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); ArgentinaFil: Santa Maria, Guillermo Esteban. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); ArgentinaFil: Dubcovsky, Jorge. University of California at Davis; Estados UnidosJohn Wiley & Sons Inc.2020-11info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/169779Gabay, Gilad; Zhang, Junli; Burguener, German Federico; Howell, Tyson; Wang, Hanchao; et al.; Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length; John Wiley & Sons Inc.; Plant Genome; 11-2020; 1-161940-3372CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://acsess.onlinelibrary.wiley.com/doi/full/10.1002/tpg2.20079info:eu-repo/semantics/altIdentifier/doi/10.1002/tpg2.20079info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-nd/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-10T12:59:39Zoai:ri.conicet.gov.ar:11336/169779instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-10 12:59:40.181CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length
title Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length
spellingShingle Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length
Gabay, Gilad
Wheat
Rye
1BS
1RS translocation
title_short Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length
title_full Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length
title_fullStr Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length
title_full_unstemmed Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length
title_sort Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length
dc.creator.none.fl_str_mv Gabay, Gilad
Zhang, Junli
Burguener, German Federico
Howell, Tyson
Wang, Hanchao
Fahima, Tzion
Lukaszewski, Adam
Moriconi, Jorge Ignacio
Santa Maria, Guillermo Esteban
Dubcovsky, Jorge
author Gabay, Gilad
author_facet Gabay, Gilad
Zhang, Junli
Burguener, German Federico
Howell, Tyson
Wang, Hanchao
Fahima, Tzion
Lukaszewski, Adam
Moriconi, Jorge Ignacio
Santa Maria, Guillermo Esteban
Dubcovsky, Jorge
author_role author
author2 Zhang, Junli
Burguener, German Federico
Howell, Tyson
Wang, Hanchao
Fahima, Tzion
Lukaszewski, Adam
Moriconi, Jorge Ignacio
Santa Maria, Guillermo Esteban
Dubcovsky, Jorge
author2_role author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Wheat
Rye
1BS
1RS translocation
topic Wheat
Rye
1BS
1RS translocation
purl_subject.fl_str_mv https://purl.org/becyt/ford/4.4
https://purl.org/becyt/ford/4
dc.description.none.fl_txt_mv Good understanding of the genes controlling root development is required to engineer root systems better adapted to different soil types. In wheat (Triticum aestivum L.), the 1RS.1BL wheat–rye (Secale cereale L.) translocation has been associated with improved drought tolerance and a large root system. However, an isogenic line carrying an interstitial segment from wheat chromosome arm 1BS in the distal region of the 1RS arm (1RSRW) showed reduced grain yield and shorter roots both in the field and in hydroponic cultures relative to isogenic lines with the complete 1RS arm. In this study, we used exome capture to characterize 1RSRW and its parental lines T-9 and 1B+40. We show that 1RSRW has a 7.0 Mb duplicated 1RS region and a 4.8 Mb 1BS insertion colinear with the 1RS duplication, resulting in triplicated genes. Lines homozygous for 1RSRW have short seminal roots, while lines heterozygous for this chromosome have roots of intermediate length. By contrast, near-isogenic lines carrying only the 1BS distal region or the 1RS-1BS duplication have long seminal roots similar to 1RS, suggesting a limited effect of the 1BS genes. These results suggest that the dosage of duplicated 1RS genes is critical for seminal root length. An induced deletion encompassing 38 orthologous wheat and rye duplicated genes restored root length and confirmed the importance of gene dosage in the short-root phenotype. We explored the expression profiles and functional annotation of these genes and discuss their potential as candidate genes for the regulation of seminal root length in wheat.
Fil: Gabay, Gilad. University of California at Davis; Estados Unidos
Fil: Zhang, Junli. University of California at Davis; Estados Unidos
Fil: Burguener, German Federico. University of California at Davis; Estados Unidos
Fil: Howell, Tyson. University of California at Davis; Estados Unidos
Fil: Wang, Hanchao. University Of Haifa; Israel
Fil: Fahima, Tzion. University of California at Davis; Estados Unidos
Fil: Lukaszewski, Adam. University of California at Davis; Estados Unidos
Fil: Moriconi, Jorge Ignacio. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); Argentina
Fil: Santa Maria, Guillermo Esteban. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús). Universidad Nacional de San Martín. Instituto de Investigaciones Biotecnológicas. Instituto de Investigaciones Biotecnológicas "Dr. Raúl Alfonsín" (sede Chascomús); Argentina
Fil: Dubcovsky, Jorge. University of California at Davis; Estados Unidos
description Good understanding of the genes controlling root development is required to engineer root systems better adapted to different soil types. In wheat (Triticum aestivum L.), the 1RS.1BL wheat–rye (Secale cereale L.) translocation has been associated with improved drought tolerance and a large root system. However, an isogenic line carrying an interstitial segment from wheat chromosome arm 1BS in the distal region of the 1RS arm (1RSRW) showed reduced grain yield and shorter roots both in the field and in hydroponic cultures relative to isogenic lines with the complete 1RS arm. In this study, we used exome capture to characterize 1RSRW and its parental lines T-9 and 1B+40. We show that 1RSRW has a 7.0 Mb duplicated 1RS region and a 4.8 Mb 1BS insertion colinear with the 1RS duplication, resulting in triplicated genes. Lines homozygous for 1RSRW have short seminal roots, while lines heterozygous for this chromosome have roots of intermediate length. By contrast, near-isogenic lines carrying only the 1BS distal region or the 1RS-1BS duplication have long seminal roots similar to 1RS, suggesting a limited effect of the 1BS genes. These results suggest that the dosage of duplicated 1RS genes is critical for seminal root length. An induced deletion encompassing 38 orthologous wheat and rye duplicated genes restored root length and confirmed the importance of gene dosage in the short-root phenotype. We explored the expression profiles and functional annotation of these genes and discuss their potential as candidate genes for the regulation of seminal root length in wheat.
publishDate 2020
dc.date.none.fl_str_mv 2020-11
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/169779
Gabay, Gilad; Zhang, Junli; Burguener, German Federico; Howell, Tyson; Wang, Hanchao; et al.; Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length; John Wiley & Sons Inc.; Plant Genome; 11-2020; 1-16
1940-3372
CONICET Digital
CONICET
url http://hdl.handle.net/11336/169779
identifier_str_mv Gabay, Gilad; Zhang, Junli; Burguener, German Federico; Howell, Tyson; Wang, Hanchao; et al.; Structural rearrangements in wheat (1BS)–rye (1RS) recombinant chromosomes affect gene dosage and root length; John Wiley & Sons Inc.; Plant Genome; 11-2020; 1-16
1940-3372
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://acsess.onlinelibrary.wiley.com/doi/full/10.1002/tpg2.20079
info:eu-repo/semantics/altIdentifier/doi/10.1002/tpg2.20079
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-nd/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv John Wiley & Sons Inc.
publisher.none.fl_str_mv John Wiley & Sons Inc.
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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