Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients

Autores
Cho, Won Jin; Oliveira, Daniel S.M.; Najy, Abdo J.; Mainetti, Leandro Ernesto; Aoun, Hussein D.; Cher, Michael L.; Heath, Elisabeth; Kim, Hyeong-Reh C.; Bonfil, Ricardo Daniel
Año de publicación
2016
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Background: Characterization of genes linked to bone metastasis is critical for identification of novel prognostic or predictive biomarkers and potential therapeutic targets in metastatic castrate-resistant prostate cancer (mCRPC). Although bone marrow core biopsies (BMBx) can be obtained for gene profiling, the procedure itself is invasive and uncommon practice in mCRPC patients. Conversely, circulating tumor cells (CTCs), which are likely to stem from bone metastases, can be isolated from blood. The goals of this exploratory study were to establish a sensitive methodology to analyze gene expression in BMBx and CTCs, and to determine whether the presence or absence of detectable gene expression is concordant in matching samples from mCRPC patients. Methods: The CellSearch® platform was used to enrich and enumerate CTCs. Low numbers of PC3 prostate cancer (PCa) cells were spiked into normal blood to assess cell recovery rate. RNA extracted from recovered PC3 cells was amplified using an Eberwine-based procedure to obtain antisense mRNA (aRNA), and assess the linearity of the RNA amplification method. In this pilot study, RNAs extracted from CTCs and PCa cells microdissected from formalin-fixed paraffin-embedded BMBx, were amplified to obtain aRNA and assess the expression of eight genes functionally relevant to PCa bone metastasis using RT-PCR. Results: RNAs were successfully extracted from as few as 1-5 PCa cells in blood samples. The relative expression levels of reference genes were maintained after RNA amplification. The integrity of the amplified RNA was also demonstrated by RT-PCR analysis using primer sets that target the 5'-end, middle, and 3'-end of reference mRNA. We found that in 21 out of 28 comparisons, the presence or absence of detectable gene expression in CTCs and PCa cells microdissected from single bone lesions of the same patients was concordant. Conclusions: This exploratory analysis suggests that aRNA amplification through in vitro transcription may be useful as a method to detect gene expression in small numbers of CTCs and tumor cells microdissected from bone metastatic lesions. In some cases, gene expression in CTCs and BMBxs was not concordant, raising questions about using CTC gene expression to make clinical decisions.
Fil: Cho, Won Jin. Wayne State University; Estados Unidos
Fil: Oliveira, Daniel S.M.. Wayne State University; Estados Unidos
Fil: Najy, Abdo J.. Wayne State University; Estados Unidos
Fil: Mainetti, Leandro Ernesto. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Wayne State University; Estados Unidos
Fil: Aoun, Hussein D.. Wayne State University; Estados Unidos
Fil: Cher, Michael L.. Wayne State University; Estados Unidos
Fil: Heath, Elisabeth. Wayne State University; Estados Unidos
Fil: Kim, Hyeong-Reh C.. Wayne State University; Estados Unidos
Fil: Bonfil, Ricardo Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Wayne State University; Estados Unidos
Materia
BONE METASTASIS
CIRCULATING TUMOR CELLS
GENE EXPRESSION
LASER CAPTURE MICRODISSECTION
PROSTATE CANCER
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/50321

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oai_identifier_str oai:ri.conicet.gov.ar:11336/50321
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patientsCho, Won JinOliveira, Daniel S.M.Najy, Abdo J.Mainetti, Leandro ErnestoAoun, Hussein D.Cher, Michael L.Heath, ElisabethKim, Hyeong-Reh C.Bonfil, Ricardo DanielBONE METASTASISCIRCULATING TUMOR CELLSGENE EXPRESSIONLASER CAPTURE MICRODISSECTIONPROSTATE CANCERhttps://purl.org/becyt/ford/3.1https://purl.org/becyt/ford/3Background: Characterization of genes linked to bone metastasis is critical for identification of novel prognostic or predictive biomarkers and potential therapeutic targets in metastatic castrate-resistant prostate cancer (mCRPC). Although bone marrow core biopsies (BMBx) can be obtained for gene profiling, the procedure itself is invasive and uncommon practice in mCRPC patients. Conversely, circulating tumor cells (CTCs), which are likely to stem from bone metastases, can be isolated from blood. The goals of this exploratory study were to establish a sensitive methodology to analyze gene expression in BMBx and CTCs, and to determine whether the presence or absence of detectable gene expression is concordant in matching samples from mCRPC patients. Methods: The CellSearch® platform was used to enrich and enumerate CTCs. Low numbers of PC3 prostate cancer (PCa) cells were spiked into normal blood to assess cell recovery rate. RNA extracted from recovered PC3 cells was amplified using an Eberwine-based procedure to obtain antisense mRNA (aRNA), and assess the linearity of the RNA amplification method. In this pilot study, RNAs extracted from CTCs and PCa cells microdissected from formalin-fixed paraffin-embedded BMBx, were amplified to obtain aRNA and assess the expression of eight genes functionally relevant to PCa bone metastasis using RT-PCR. Results: RNAs were successfully extracted from as few as 1-5 PCa cells in blood samples. The relative expression levels of reference genes were maintained after RNA amplification. The integrity of the amplified RNA was also demonstrated by RT-PCR analysis using primer sets that target the 5'-end, middle, and 3'-end of reference mRNA. We found that in 21 out of 28 comparisons, the presence or absence of detectable gene expression in CTCs and PCa cells microdissected from single bone lesions of the same patients was concordant. Conclusions: This exploratory analysis suggests that aRNA amplification through in vitro transcription may be useful as a method to detect gene expression in small numbers of CTCs and tumor cells microdissected from bone metastatic lesions. In some cases, gene expression in CTCs and BMBxs was not concordant, raising questions about using CTC gene expression to make clinical decisions.Fil: Cho, Won Jin. Wayne State University; Estados UnidosFil: Oliveira, Daniel S.M.. Wayne State University; Estados UnidosFil: Najy, Abdo J.. Wayne State University; Estados UnidosFil: Mainetti, Leandro Ernesto. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Wayne State University; Estados UnidosFil: Aoun, Hussein D.. Wayne State University; Estados UnidosFil: Cher, Michael L.. Wayne State University; Estados UnidosFil: Heath, Elisabeth. Wayne State University; Estados UnidosFil: Kim, Hyeong-Reh C.. Wayne State University; Estados UnidosFil: Bonfil, Ricardo Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Wayne State University; Estados UnidosBioMed Central2016-03info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/50321Cho, Won Jin; Oliveira, Daniel S.M.; Najy, Abdo J.; Mainetti, Leandro Ernesto; Aoun, Hussein D.; et al.; Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients; BioMed Central; Journal Of Translational Medicine; 14; 1; 3-2016; 1-121479-5876CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1186/s12967-016-0829-5info:eu-repo/semantics/altIdentifier/url/https://translational-medicine.biomedcentral.com/articles/10.1186/s12967-016-0829-5info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-11-05T09:46:26Zoai:ri.conicet.gov.ar:11336/50321instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-11-05 09:46:26.572CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients
title Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients
spellingShingle Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients
Cho, Won Jin
BONE METASTASIS
CIRCULATING TUMOR CELLS
GENE EXPRESSION
LASER CAPTURE MICRODISSECTION
PROSTATE CANCER
title_short Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients
title_full Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients
title_fullStr Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients
title_full_unstemmed Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients
title_sort Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients
dc.creator.none.fl_str_mv Cho, Won Jin
Oliveira, Daniel S.M.
Najy, Abdo J.
Mainetti, Leandro Ernesto
Aoun, Hussein D.
Cher, Michael L.
Heath, Elisabeth
Kim, Hyeong-Reh C.
Bonfil, Ricardo Daniel
author Cho, Won Jin
author_facet Cho, Won Jin
Oliveira, Daniel S.M.
Najy, Abdo J.
Mainetti, Leandro Ernesto
Aoun, Hussein D.
Cher, Michael L.
Heath, Elisabeth
Kim, Hyeong-Reh C.
Bonfil, Ricardo Daniel
author_role author
author2 Oliveira, Daniel S.M.
Najy, Abdo J.
Mainetti, Leandro Ernesto
Aoun, Hussein D.
Cher, Michael L.
Heath, Elisabeth
Kim, Hyeong-Reh C.
Bonfil, Ricardo Daniel
author2_role author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv BONE METASTASIS
CIRCULATING TUMOR CELLS
GENE EXPRESSION
LASER CAPTURE MICRODISSECTION
PROSTATE CANCER
topic BONE METASTASIS
CIRCULATING TUMOR CELLS
GENE EXPRESSION
LASER CAPTURE MICRODISSECTION
PROSTATE CANCER
purl_subject.fl_str_mv https://purl.org/becyt/ford/3.1
https://purl.org/becyt/ford/3
dc.description.none.fl_txt_mv Background: Characterization of genes linked to bone metastasis is critical for identification of novel prognostic or predictive biomarkers and potential therapeutic targets in metastatic castrate-resistant prostate cancer (mCRPC). Although bone marrow core biopsies (BMBx) can be obtained for gene profiling, the procedure itself is invasive and uncommon practice in mCRPC patients. Conversely, circulating tumor cells (CTCs), which are likely to stem from bone metastases, can be isolated from blood. The goals of this exploratory study were to establish a sensitive methodology to analyze gene expression in BMBx and CTCs, and to determine whether the presence or absence of detectable gene expression is concordant in matching samples from mCRPC patients. Methods: The CellSearch® platform was used to enrich and enumerate CTCs. Low numbers of PC3 prostate cancer (PCa) cells were spiked into normal blood to assess cell recovery rate. RNA extracted from recovered PC3 cells was amplified using an Eberwine-based procedure to obtain antisense mRNA (aRNA), and assess the linearity of the RNA amplification method. In this pilot study, RNAs extracted from CTCs and PCa cells microdissected from formalin-fixed paraffin-embedded BMBx, were amplified to obtain aRNA and assess the expression of eight genes functionally relevant to PCa bone metastasis using RT-PCR. Results: RNAs were successfully extracted from as few as 1-5 PCa cells in blood samples. The relative expression levels of reference genes were maintained after RNA amplification. The integrity of the amplified RNA was also demonstrated by RT-PCR analysis using primer sets that target the 5'-end, middle, and 3'-end of reference mRNA. We found that in 21 out of 28 comparisons, the presence or absence of detectable gene expression in CTCs and PCa cells microdissected from single bone lesions of the same patients was concordant. Conclusions: This exploratory analysis suggests that aRNA amplification through in vitro transcription may be useful as a method to detect gene expression in small numbers of CTCs and tumor cells microdissected from bone metastatic lesions. In some cases, gene expression in CTCs and BMBxs was not concordant, raising questions about using CTC gene expression to make clinical decisions.
Fil: Cho, Won Jin. Wayne State University; Estados Unidos
Fil: Oliveira, Daniel S.M.. Wayne State University; Estados Unidos
Fil: Najy, Abdo J.. Wayne State University; Estados Unidos
Fil: Mainetti, Leandro Ernesto. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Wayne State University; Estados Unidos
Fil: Aoun, Hussein D.. Wayne State University; Estados Unidos
Fil: Cher, Michael L.. Wayne State University; Estados Unidos
Fil: Heath, Elisabeth. Wayne State University; Estados Unidos
Fil: Kim, Hyeong-Reh C.. Wayne State University; Estados Unidos
Fil: Bonfil, Ricardo Daniel. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Wayne State University; Estados Unidos
description Background: Characterization of genes linked to bone metastasis is critical for identification of novel prognostic or predictive biomarkers and potential therapeutic targets in metastatic castrate-resistant prostate cancer (mCRPC). Although bone marrow core biopsies (BMBx) can be obtained for gene profiling, the procedure itself is invasive and uncommon practice in mCRPC patients. Conversely, circulating tumor cells (CTCs), which are likely to stem from bone metastases, can be isolated from blood. The goals of this exploratory study were to establish a sensitive methodology to analyze gene expression in BMBx and CTCs, and to determine whether the presence or absence of detectable gene expression is concordant in matching samples from mCRPC patients. Methods: The CellSearch® platform was used to enrich and enumerate CTCs. Low numbers of PC3 prostate cancer (PCa) cells were spiked into normal blood to assess cell recovery rate. RNA extracted from recovered PC3 cells was amplified using an Eberwine-based procedure to obtain antisense mRNA (aRNA), and assess the linearity of the RNA amplification method. In this pilot study, RNAs extracted from CTCs and PCa cells microdissected from formalin-fixed paraffin-embedded BMBx, were amplified to obtain aRNA and assess the expression of eight genes functionally relevant to PCa bone metastasis using RT-PCR. Results: RNAs were successfully extracted from as few as 1-5 PCa cells in blood samples. The relative expression levels of reference genes were maintained after RNA amplification. The integrity of the amplified RNA was also demonstrated by RT-PCR analysis using primer sets that target the 5'-end, middle, and 3'-end of reference mRNA. We found that in 21 out of 28 comparisons, the presence or absence of detectable gene expression in CTCs and PCa cells microdissected from single bone lesions of the same patients was concordant. Conclusions: This exploratory analysis suggests that aRNA amplification through in vitro transcription may be useful as a method to detect gene expression in small numbers of CTCs and tumor cells microdissected from bone metastatic lesions. In some cases, gene expression in CTCs and BMBxs was not concordant, raising questions about using CTC gene expression to make clinical decisions.
publishDate 2016
dc.date.none.fl_str_mv 2016-03
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/50321
Cho, Won Jin; Oliveira, Daniel S.M.; Najy, Abdo J.; Mainetti, Leandro Ernesto; Aoun, Hussein D.; et al.; Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients; BioMed Central; Journal Of Translational Medicine; 14; 1; 3-2016; 1-12
1479-5876
CONICET Digital
CONICET
url http://hdl.handle.net/11336/50321
identifier_str_mv Cho, Won Jin; Oliveira, Daniel S.M.; Najy, Abdo J.; Mainetti, Leandro Ernesto; Aoun, Hussein D.; et al.; Gene expression analysis of bone metastasis and circulating tumor cells from metastatic castrate-resistant prostate cancer patients; BioMed Central; Journal Of Translational Medicine; 14; 1; 3-2016; 1-12
1479-5876
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1186/s12967-016-0829-5
info:eu-repo/semantics/altIdentifier/url/https://translational-medicine.biomedcentral.com/articles/10.1186/s12967-016-0829-5
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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