Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level
- Autores
- Goya, Stephanie; Ruis, Christopher; Neher, Richard A.; Meijer, Adam; Aziz, Ammar; Hinrichs, Angie S.; von Gottberg, Anne; Roemer, Cornelius; Amoako, Daniel G.; Acuña, Dolores; McBroome, Jakob; Otieno, James R.; Bhiman, Jinal N.; Everatt, Josie; Muñoz Escalante, Juan C.; Ramaekers, Kaat; Duggan, Kate; Presser, Lance D.; Urbanska, Laura; Venter, Marietjie; Wolter, Nicole; Peret, Teresa C. T.; Salimi, Vahid; Potdar, Varsha; Borges, Vítor; Viegas, Mariana
- Año de publicación
- 2024
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- A globally implemented unified phylogenetic classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. We formulated global consensus of HRSV classification on the basis of the challenges and limitations of our previous proposals and the future of genomic surveillance. From a high-quality curated dataset of 1,480 HRSV-A and 1,385 HRSV-B genomes submitted to GenBank and GISAID (https://www. gisaid.org) public sequence databases through March 2023, we categorized HRSV-A/B sequences into lineages based on phylogenetic clades and amino acid markers. We defined 24 lineages within HRSV-A and 16 within HRSV-B and provided guidelines for defining prospective lineages. Our classification demonstrated robustness in its applicability to both complete and partial genomes. We envision that this unified HRSV classification proposal will strengthen HRSV molecular epidemiology on a global scale.
Fil: Goya, Stephanie. University of Washington; Estados Unidos. Gobierno de la Ciudad de Buenos Aires. Hospital General de Niños "Ricardo Gutiérrez". Laboratorio de Virología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina
Fil: Ruis, Christopher. University of Cambridge; Estados Unidos
Fil: Neher, Richard A.. University of Basel; Suiza
Fil: Meijer, Adam. National Institute for Public Health and the Environment; Países Bajos
Fil: Aziz, Ammar. World Health Organization Collaborating Centre for Reference and Research on Influenza; Australia
Fil: Hinrichs, Angie S.. University of California at Santa Cruz; Estados Unidos
Fil: von Gottberg, Anne. University of the Witwatersrand; Sudáfrica. National Institute for Communicable Diseases of the National Health Laboratory Service; Sudáfrica
Fil: Roemer, Cornelius. University of Basel; Suiza
Fil: Amoako, Daniel G.. University of KwaZulu-Natal; Sudáfrica
Fil: Acuña, Dolores. Universidad Nacional de la Plata. Facultad de Cs.exactas. Laboratorio de Salud Publica.; . Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina
Fil: McBroome, Jakob. University of California at Santa Cruz; Estados Unidos
Fil: Otieno, James R.. Theiagen Genomics; Estados Unidos
Fil: Bhiman, Jinal N.. University of the Witwatersrand; Sudáfrica. National Institute for Communicable Diseases of the National Health Laboratory Service; Sudáfrica
Fil: Everatt, Josie. National Institute for Communicable Diseases of the National Health Laboratory Service; Sudáfrica
Fil: Muñoz Escalante, Juan C.. Universidad Autónoma de San Luis Potosí; México
Fil: Ramaekers, Kaat. Rega Institute for Medical Research; Bélgica
Fil: Duggan, Kate. University of Edinburgh; Reino Unido
Fil: Presser, Lance D.. National Institute for Public Health and the Environment; Países Bajos
Fil: Urbanska, Laura. University of Basel; Suiza
Fil: Venter, Marietjie. University of Pretoria; Sudáfrica
Fil: Wolter, Nicole. National Institute for Communicable Diseases of the National Health Laboratory Service; Sudáfrica. University of the Witwatersrand; Sudáfrica
Fil: Peret, Teresa C. T.. University of Texas; Estados Unidos
Fil: Salimi, Vahid. Tehran University of Medical Sciences; Irán
Fil: Potdar, Varsha. Indian Council of Medical Research; India
Fil: Borges, Vítor. National Institute of Health Doutor Ricardo Jorge; Portugal
Fil: Viegas, Mariana. Universidad Nacional de la Plata. Facultad de Cs.exactas. Laboratorio de Salud Publica.; . Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina - Materia
-
RESPIRATORY SYNCYTIAL VIRUS
SURVEILLANCE
GENOME
CLASSIFICATION
GENETIC LINEAGE - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
.jpg)
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/244440
Ver los metadatos del registro completo
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Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup LevelGoya, StephanieRuis, ChristopherNeher, Richard A.Meijer, AdamAziz, AmmarHinrichs, Angie S.von Gottberg, AnneRoemer, CorneliusAmoako, Daniel G.Acuña, DoloresMcBroome, JakobOtieno, James R.Bhiman, Jinal N.Everatt, JosieMuñoz Escalante, Juan C.Ramaekers, KaatDuggan, KatePresser, Lance D.Urbanska, LauraVenter, MarietjieWolter, NicolePeret, Teresa C. T.Salimi, VahidPotdar, VarshaBorges, VítorViegas, MarianaRESPIRATORY SYNCYTIAL VIRUSSURVEILLANCEGENOMECLASSIFICATIONGENETIC LINEAGEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1A globally implemented unified phylogenetic classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. We formulated global consensus of HRSV classification on the basis of the challenges and limitations of our previous proposals and the future of genomic surveillance. From a high-quality curated dataset of 1,480 HRSV-A and 1,385 HRSV-B genomes submitted to GenBank and GISAID (https://www. gisaid.org) public sequence databases through March 2023, we categorized HRSV-A/B sequences into lineages based on phylogenetic clades and amino acid markers. We defined 24 lineages within HRSV-A and 16 within HRSV-B and provided guidelines for defining prospective lineages. Our classification demonstrated robustness in its applicability to both complete and partial genomes. We envision that this unified HRSV classification proposal will strengthen HRSV molecular epidemiology on a global scale.Fil: Goya, Stephanie. University of Washington; Estados Unidos. Gobierno de la Ciudad de Buenos Aires. Hospital General de Niños "Ricardo Gutiérrez". Laboratorio de Virología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; ArgentinaFil: Ruis, Christopher. University of Cambridge; Estados UnidosFil: Neher, Richard A.. University of Basel; SuizaFil: Meijer, Adam. National Institute for Public Health and the Environment; Países BajosFil: Aziz, Ammar. World Health Organization Collaborating Centre for Reference and Research on Influenza; AustraliaFil: Hinrichs, Angie S.. University of California at Santa Cruz; Estados UnidosFil: von Gottberg, Anne. University of the Witwatersrand; Sudáfrica. National Institute for Communicable Diseases of the National Health Laboratory Service; SudáfricaFil: Roemer, Cornelius. University of Basel; SuizaFil: Amoako, Daniel G.. University of KwaZulu-Natal; SudáfricaFil: Acuña, Dolores. Universidad Nacional de la Plata. Facultad de Cs.exactas. Laboratorio de Salud Publica.; . Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; ArgentinaFil: McBroome, Jakob. University of California at Santa Cruz; Estados UnidosFil: Otieno, James R.. Theiagen Genomics; Estados UnidosFil: Bhiman, Jinal N.. University of the Witwatersrand; Sudáfrica. National Institute for Communicable Diseases of the National Health Laboratory Service; SudáfricaFil: Everatt, Josie. National Institute for Communicable Diseases of the National Health Laboratory Service; SudáfricaFil: Muñoz Escalante, Juan C.. Universidad Autónoma de San Luis Potosí; MéxicoFil: Ramaekers, Kaat. Rega Institute for Medical Research; BélgicaFil: Duggan, Kate. University of Edinburgh; Reino UnidoFil: Presser, Lance D.. National Institute for Public Health and the Environment; Países BajosFil: Urbanska, Laura. University of Basel; SuizaFil: Venter, Marietjie. University of Pretoria; SudáfricaFil: Wolter, Nicole. National Institute for Communicable Diseases of the National Health Laboratory Service; Sudáfrica. University of the Witwatersrand; SudáfricaFil: Peret, Teresa C. T.. University of Texas; Estados UnidosFil: Salimi, Vahid. Tehran University of Medical Sciences; IránFil: Potdar, Varsha. Indian Council of Medical Research; IndiaFil: Borges, Vítor. National Institute of Health Doutor Ricardo Jorge; PortugalFil: Viegas, Mariana. Universidad Nacional de la Plata. Facultad de Cs.exactas. Laboratorio de Salud Publica.; . Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; ArgentinaCenters Disease Control2024-08info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/244440Goya, Stephanie; Ruis, Christopher; Neher, Richard A.; Meijer, Adam; Aziz, Ammar; et al.; Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level; Centers Disease Control; Emerging Infectious Diseases; 30; 8; 8-2024; 1631-16411080-6040CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://wwwnc.cdc.gov/eid/article/30/8/24-0209_articleinfo:eu-repo/semantics/altIdentifier/doi/10.3201/eid3008.240209info:eu-repo/semantics/altIdentifier/url/https://www.ncbi.nlm.nih.gov/pmc/articles/PMC11286072/info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-22T11:39:01Zoai:ri.conicet.gov.ar:11336/244440instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-22 11:39:01.759CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
| dc.title.none.fl_str_mv |
Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level |
| title |
Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level |
| spellingShingle |
Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level Goya, Stephanie RESPIRATORY SYNCYTIAL VIRUS SURVEILLANCE GENOME CLASSIFICATION GENETIC LINEAGE |
| title_short |
Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level |
| title_full |
Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level |
| title_fullStr |
Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level |
| title_full_unstemmed |
Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level |
| title_sort |
Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level |
| dc.creator.none.fl_str_mv |
Goya, Stephanie Ruis, Christopher Neher, Richard A. Meijer, Adam Aziz, Ammar Hinrichs, Angie S. von Gottberg, Anne Roemer, Cornelius Amoako, Daniel G. Acuña, Dolores McBroome, Jakob Otieno, James R. Bhiman, Jinal N. Everatt, Josie Muñoz Escalante, Juan C. Ramaekers, Kaat Duggan, Kate Presser, Lance D. Urbanska, Laura Venter, Marietjie Wolter, Nicole Peret, Teresa C. T. Salimi, Vahid Potdar, Varsha Borges, Vítor Viegas, Mariana |
| author |
Goya, Stephanie |
| author_facet |
Goya, Stephanie Ruis, Christopher Neher, Richard A. Meijer, Adam Aziz, Ammar Hinrichs, Angie S. von Gottberg, Anne Roemer, Cornelius Amoako, Daniel G. Acuña, Dolores McBroome, Jakob Otieno, James R. Bhiman, Jinal N. Everatt, Josie Muñoz Escalante, Juan C. Ramaekers, Kaat Duggan, Kate Presser, Lance D. Urbanska, Laura Venter, Marietjie Wolter, Nicole Peret, Teresa C. T. Salimi, Vahid Potdar, Varsha Borges, Vítor Viegas, Mariana |
| author_role |
author |
| author2 |
Ruis, Christopher Neher, Richard A. Meijer, Adam Aziz, Ammar Hinrichs, Angie S. von Gottberg, Anne Roemer, Cornelius Amoako, Daniel G. Acuña, Dolores McBroome, Jakob Otieno, James R. Bhiman, Jinal N. Everatt, Josie Muñoz Escalante, Juan C. Ramaekers, Kaat Duggan, Kate Presser, Lance D. Urbanska, Laura Venter, Marietjie Wolter, Nicole Peret, Teresa C. T. Salimi, Vahid Potdar, Varsha Borges, Vítor Viegas, Mariana |
| author2_role |
author author author author author author author author author author author author author author author author author author author author author author author author author |
| dc.subject.none.fl_str_mv |
RESPIRATORY SYNCYTIAL VIRUS SURVEILLANCE GENOME CLASSIFICATION GENETIC LINEAGE |
| topic |
RESPIRATORY SYNCYTIAL VIRUS SURVEILLANCE GENOME CLASSIFICATION GENETIC LINEAGE |
| purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
| dc.description.none.fl_txt_mv |
A globally implemented unified phylogenetic classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. We formulated global consensus of HRSV classification on the basis of the challenges and limitations of our previous proposals and the future of genomic surveillance. From a high-quality curated dataset of 1,480 HRSV-A and 1,385 HRSV-B genomes submitted to GenBank and GISAID (https://www. gisaid.org) public sequence databases through March 2023, we categorized HRSV-A/B sequences into lineages based on phylogenetic clades and amino acid markers. We defined 24 lineages within HRSV-A and 16 within HRSV-B and provided guidelines for defining prospective lineages. Our classification demonstrated robustness in its applicability to both complete and partial genomes. We envision that this unified HRSV classification proposal will strengthen HRSV molecular epidemiology on a global scale. Fil: Goya, Stephanie. University of Washington; Estados Unidos. Gobierno de la Ciudad de Buenos Aires. Hospital General de Niños "Ricardo Gutiérrez". Laboratorio de Virología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina Fil: Ruis, Christopher. University of Cambridge; Estados Unidos Fil: Neher, Richard A.. University of Basel; Suiza Fil: Meijer, Adam. National Institute for Public Health and the Environment; Países Bajos Fil: Aziz, Ammar. World Health Organization Collaborating Centre for Reference and Research on Influenza; Australia Fil: Hinrichs, Angie S.. University of California at Santa Cruz; Estados Unidos Fil: von Gottberg, Anne. University of the Witwatersrand; Sudáfrica. National Institute for Communicable Diseases of the National Health Laboratory Service; Sudáfrica Fil: Roemer, Cornelius. University of Basel; Suiza Fil: Amoako, Daniel G.. University of KwaZulu-Natal; Sudáfrica Fil: Acuña, Dolores. Universidad Nacional de la Plata. Facultad de Cs.exactas. Laboratorio de Salud Publica.; . Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina Fil: McBroome, Jakob. University of California at Santa Cruz; Estados Unidos Fil: Otieno, James R.. Theiagen Genomics; Estados Unidos Fil: Bhiman, Jinal N.. University of the Witwatersrand; Sudáfrica. National Institute for Communicable Diseases of the National Health Laboratory Service; Sudáfrica Fil: Everatt, Josie. National Institute for Communicable Diseases of the National Health Laboratory Service; Sudáfrica Fil: Muñoz Escalante, Juan C.. Universidad Autónoma de San Luis Potosí; México Fil: Ramaekers, Kaat. Rega Institute for Medical Research; Bélgica Fil: Duggan, Kate. University of Edinburgh; Reino Unido Fil: Presser, Lance D.. National Institute for Public Health and the Environment; Países Bajos Fil: Urbanska, Laura. University of Basel; Suiza Fil: Venter, Marietjie. University of Pretoria; Sudáfrica Fil: Wolter, Nicole. National Institute for Communicable Diseases of the National Health Laboratory Service; Sudáfrica. University of the Witwatersrand; Sudáfrica Fil: Peret, Teresa C. T.. University of Texas; Estados Unidos Fil: Salimi, Vahid. Tehran University of Medical Sciences; Irán Fil: Potdar, Varsha. Indian Council of Medical Research; India Fil: Borges, Vítor. National Institute of Health Doutor Ricardo Jorge; Portugal Fil: Viegas, Mariana. Universidad Nacional de la Plata. Facultad de Cs.exactas. Laboratorio de Salud Publica.; . Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - La Plata; Argentina |
| description |
A globally implemented unified phylogenetic classification for human respiratory syncytial virus (HRSV) below the subgroup level remains elusive. We formulated global consensus of HRSV classification on the basis of the challenges and limitations of our previous proposals and the future of genomic surveillance. From a high-quality curated dataset of 1,480 HRSV-A and 1,385 HRSV-B genomes submitted to GenBank and GISAID (https://www. gisaid.org) public sequence databases through March 2023, we categorized HRSV-A/B sequences into lineages based on phylogenetic clades and amino acid markers. We defined 24 lineages within HRSV-A and 16 within HRSV-B and provided guidelines for defining prospective lineages. Our classification demonstrated robustness in its applicability to both complete and partial genomes. We envision that this unified HRSV classification proposal will strengthen HRSV molecular epidemiology on a global scale. |
| publishDate |
2024 |
| dc.date.none.fl_str_mv |
2024-08 |
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info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
| format |
article |
| status_str |
publishedVersion |
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http://hdl.handle.net/11336/244440 Goya, Stephanie; Ruis, Christopher; Neher, Richard A.; Meijer, Adam; Aziz, Ammar; et al.; Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level; Centers Disease Control; Emerging Infectious Diseases; 30; 8; 8-2024; 1631-1641 1080-6040 CONICET Digital CONICET |
| url |
http://hdl.handle.net/11336/244440 |
| identifier_str_mv |
Goya, Stephanie; Ruis, Christopher; Neher, Richard A.; Meijer, Adam; Aziz, Ammar; et al.; Standardized Phylogenetic Classification of Human Respiratory Syncytial Virus Below the Subgroup Level; Centers Disease Control; Emerging Infectious Diseases; 30; 8; 8-2024; 1631-1641 1080-6040 CONICET Digital CONICET |
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eng |
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eng |
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Centers Disease Control |
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Centers Disease Control |
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dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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