Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde

Autores
Marcelino, Virginia; Saracho, Hayde; Kurth, Daniel German
Año de publicación
2023
Idioma
inglés
Tipo de recurso
documento de conferencia
Estado
versión publicada
Descripción
The Argentine Puna represents a unique environment, characterized by high UV radiation, low oxygen pressure and extreme temperature fluctuations. There we find saline water deposits such as Laguna Verde (Salar de Antofalla, 3300 m.a.s.l.) surrounded by large extensions of white gypsum-halite precipitating crusts. These crusts harbor microbial communities distributed in layers (microbial mats) defined by physicochemical requirements, light and oxygen. These mats colonize both solid and sedimentary surfaces.Metagenomic, physiological and geochemical studies reveal a series of strategies that allow these communities to survive in hypersaline wetlands by performing photosynthesis and serving as CO2 sinks. The goal of this job was to determine the biodiversity associated to these large evaporitics biofilms surrounding the lake. It was observed that the microorganisms are organized in two layers in the salt crust, an upper yellow layer, and a lower green layer. Samples were taken using a cut off sterile 10-ml syringe, were fixed immediately in RNAlater and transported to the laboratory on ice. Total genomic DNA was isolated from each of the layers using the FastDNA ™ SPIN Kit for Soil (MP Biomedical) and it sequenced with Illumina HiSeq. Raw data obtained, was uploaded to the European Bioinformatic Archive (ENA). Once uploaded, it was analyzed using the MGnify Annotation Pipeline developed by Dr. Rob Finn’s Team at EMBL-EBI. This pipeline performed the taxonomic annotation of the raw reads.The taxonomic annotation obtained, showed that the orange layer is dominated by oxygenic photoautotrophic bacteria (Cyanobacteria, ca. 65%) followed by anoxygenic photoautotrophs (Proteobacteria, ca. 10%) from the classes Alphaproteobacteria and Gammaproteobacteria and heterotrophic bacteria (Bacteoridetes, ca. 10%). The green layer is dominated by the phyla Proteobacteria, ca. 50% followed by Bacteroidetes, ca. 30% and Cyanobacteria, ca. 20%. In both layers, the phyla Actinobacteria and Euryarcheota represent at least 1% of the relative abundance.
Fil: Marcelino, Virginia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentina
Fil: Saracho, Hayde. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentina
Fil: Kurth, Daniel German. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentina
7mo Simposio Argentino de Jóvenes Investigadores en Bioinformática
San Miguel de Tucumán
Argentina
Argentine Regional Student Group
Universidad Nacional de Tucumán. Facultad de Bioquímica Química y Farmacia
Materia
TAXONOMY
METAGENOMICS
SALT CRUST
SALINE LAKE
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/213139
Acceder
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network_name_str CONICET Digital (CONICET)
spelling Taxonomic analysis of white gypsum-halite precipitations from Laguna VerdeMarcelino, VirginiaSaracho, HaydeKurth, Daniel GermanTAXONOMYMETAGENOMICSSALT CRUSTSALINE LAKEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1https://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The Argentine Puna represents a unique environment, characterized by high UV radiation, low oxygen pressure and extreme temperature fluctuations. There we find saline water deposits such as Laguna Verde (Salar de Antofalla, 3300 m.a.s.l.) surrounded by large extensions of white gypsum-halite precipitating crusts. These crusts harbor microbial communities distributed in layers (microbial mats) defined by physicochemical requirements, light and oxygen. These mats colonize both solid and sedimentary surfaces.Metagenomic, physiological and geochemical studies reveal a series of strategies that allow these communities to survive in hypersaline wetlands by performing photosynthesis and serving as CO2 sinks. The goal of this job was to determine the biodiversity associated to these large evaporitics biofilms surrounding the lake. It was observed that the microorganisms are organized in two layers in the salt crust, an upper yellow layer, and a lower green layer. Samples were taken using a cut off sterile 10-ml syringe, were fixed immediately in RNAlater and transported to the laboratory on ice. Total genomic DNA was isolated from each of the layers using the FastDNA ™ SPIN Kit for Soil (MP Biomedical) and it sequenced with Illumina HiSeq. Raw data obtained, was uploaded to the European Bioinformatic Archive (ENA). Once uploaded, it was analyzed using the MGnify Annotation Pipeline developed by Dr. Rob Finn’s Team at EMBL-EBI. This pipeline performed the taxonomic annotation of the raw reads.The taxonomic annotation obtained, showed that the orange layer is dominated by oxygenic photoautotrophic bacteria (Cyanobacteria, ca. 65%) followed by anoxygenic photoautotrophs (Proteobacteria, ca. 10%) from the classes Alphaproteobacteria and Gammaproteobacteria and heterotrophic bacteria (Bacteoridetes, ca. 10%). The green layer is dominated by the phyla Proteobacteria, ca. 50% followed by Bacteroidetes, ca. 30% and Cyanobacteria, ca. 20%. In both layers, the phyla Actinobacteria and Euryarcheota represent at least 1% of the relative abundance.Fil: Marcelino, Virginia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Saracho, Hayde. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; ArgentinaFil: Kurth, Daniel German. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentina7mo Simposio Argentino de Jóvenes Investigadores en BioinformáticaSan Miguel de TucumánArgentinaArgentine Regional Student GroupUniversidad Nacional de Tucumán. Facultad de Bioquímica Química y FarmaciaArgentine Regional Student Group2023info:eu-repo/semantics/publishedVersioninfo:eu-repo/semantics/conferenceObjectSimposioBookhttp://purl.org/coar/resource_type/c_5794info:ar-repo/semantics/documentoDeConferenciaapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/213139Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde; 7mo Simposio Argentino de Jóvenes Investigadores en Bioinformática; San Miguel de Tucumán; Argentina; 2022; 15-15CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://zenodo.org/record/7266042info:eu-repo/semantics/altIdentifier/doi/10.5281/zenodo.7266042Nacionalinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-22T11:30:37Zoai:ri.conicet.gov.ar:11336/213139instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-22 11:30:38.193CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde
title Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde
spellingShingle Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde
Marcelino, Virginia
TAXONOMY
METAGENOMICS
SALT CRUST
SALINE LAKE
title_short Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde
title_full Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde
title_fullStr Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde
title_full_unstemmed Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde
title_sort Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde
dc.creator.none.fl_str_mv Marcelino, Virginia
Saracho, Hayde
Kurth, Daniel German
author Marcelino, Virginia
author_facet Marcelino, Virginia
Saracho, Hayde
Kurth, Daniel German
author_role author
author2 Saracho, Hayde
Kurth, Daniel German
author2_role author
author
dc.subject.none.fl_str_mv TAXONOMY
METAGENOMICS
SALT CRUST
SALINE LAKE
topic TAXONOMY
METAGENOMICS
SALT CRUST
SALINE LAKE
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The Argentine Puna represents a unique environment, characterized by high UV radiation, low oxygen pressure and extreme temperature fluctuations. There we find saline water deposits such as Laguna Verde (Salar de Antofalla, 3300 m.a.s.l.) surrounded by large extensions of white gypsum-halite precipitating crusts. These crusts harbor microbial communities distributed in layers (microbial mats) defined by physicochemical requirements, light and oxygen. These mats colonize both solid and sedimentary surfaces.Metagenomic, physiological and geochemical studies reveal a series of strategies that allow these communities to survive in hypersaline wetlands by performing photosynthesis and serving as CO2 sinks. The goal of this job was to determine the biodiversity associated to these large evaporitics biofilms surrounding the lake. It was observed that the microorganisms are organized in two layers in the salt crust, an upper yellow layer, and a lower green layer. Samples were taken using a cut off sterile 10-ml syringe, were fixed immediately in RNAlater and transported to the laboratory on ice. Total genomic DNA was isolated from each of the layers using the FastDNA ™ SPIN Kit for Soil (MP Biomedical) and it sequenced with Illumina HiSeq. Raw data obtained, was uploaded to the European Bioinformatic Archive (ENA). Once uploaded, it was analyzed using the MGnify Annotation Pipeline developed by Dr. Rob Finn’s Team at EMBL-EBI. This pipeline performed the taxonomic annotation of the raw reads.The taxonomic annotation obtained, showed that the orange layer is dominated by oxygenic photoautotrophic bacteria (Cyanobacteria, ca. 65%) followed by anoxygenic photoautotrophs (Proteobacteria, ca. 10%) from the classes Alphaproteobacteria and Gammaproteobacteria and heterotrophic bacteria (Bacteoridetes, ca. 10%). The green layer is dominated by the phyla Proteobacteria, ca. 50% followed by Bacteroidetes, ca. 30% and Cyanobacteria, ca. 20%. In both layers, the phyla Actinobacteria and Euryarcheota represent at least 1% of the relative abundance.
Fil: Marcelino, Virginia. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentina
Fil: Saracho, Hayde. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentina
Fil: Kurth, Daniel German. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán. Planta Piloto de Procesos Industriales Microbiológicos; Argentina
7mo Simposio Argentino de Jóvenes Investigadores en Bioinformática
San Miguel de Tucumán
Argentina
Argentine Regional Student Group
Universidad Nacional de Tucumán. Facultad de Bioquímica Química y Farmacia
description The Argentine Puna represents a unique environment, characterized by high UV radiation, low oxygen pressure and extreme temperature fluctuations. There we find saline water deposits such as Laguna Verde (Salar de Antofalla, 3300 m.a.s.l.) surrounded by large extensions of white gypsum-halite precipitating crusts. These crusts harbor microbial communities distributed in layers (microbial mats) defined by physicochemical requirements, light and oxygen. These mats colonize both solid and sedimentary surfaces.Metagenomic, physiological and geochemical studies reveal a series of strategies that allow these communities to survive in hypersaline wetlands by performing photosynthesis and serving as CO2 sinks. The goal of this job was to determine the biodiversity associated to these large evaporitics biofilms surrounding the lake. It was observed that the microorganisms are organized in two layers in the salt crust, an upper yellow layer, and a lower green layer. Samples were taken using a cut off sterile 10-ml syringe, were fixed immediately in RNAlater and transported to the laboratory on ice. Total genomic DNA was isolated from each of the layers using the FastDNA ™ SPIN Kit for Soil (MP Biomedical) and it sequenced with Illumina HiSeq. Raw data obtained, was uploaded to the European Bioinformatic Archive (ENA). Once uploaded, it was analyzed using the MGnify Annotation Pipeline developed by Dr. Rob Finn’s Team at EMBL-EBI. This pipeline performed the taxonomic annotation of the raw reads.The taxonomic annotation obtained, showed that the orange layer is dominated by oxygenic photoautotrophic bacteria (Cyanobacteria, ca. 65%) followed by anoxygenic photoautotrophs (Proteobacteria, ca. 10%) from the classes Alphaproteobacteria and Gammaproteobacteria and heterotrophic bacteria (Bacteoridetes, ca. 10%). The green layer is dominated by the phyla Proteobacteria, ca. 50% followed by Bacteroidetes, ca. 30% and Cyanobacteria, ca. 20%. In both layers, the phyla Actinobacteria and Euryarcheota represent at least 1% of the relative abundance.
publishDate 2023
dc.date.none.fl_str_mv 2023
dc.type.none.fl_str_mv info:eu-repo/semantics/publishedVersion
info:eu-repo/semantics/conferenceObject
Simposio
Book
http://purl.org/coar/resource_type/c_5794
info:ar-repo/semantics/documentoDeConferencia
status_str publishedVersion
format conferenceObject
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/213139
Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde; 7mo Simposio Argentino de Jóvenes Investigadores en Bioinformática; San Miguel de Tucumán; Argentina; 2022; 15-15
CONICET Digital
CONICET
url http://hdl.handle.net/11336/213139
identifier_str_mv Taxonomic analysis of white gypsum-halite precipitations from Laguna Verde; 7mo Simposio Argentino de Jóvenes Investigadores en Bioinformática; San Miguel de Tucumán; Argentina; 2022; 15-15
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/url/https://zenodo.org/record/7266042
info:eu-repo/semantics/altIdentifier/doi/10.5281/zenodo.7266042
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.coverage.none.fl_str_mv Nacional
dc.publisher.none.fl_str_mv Argentine Regional Student Group
publisher.none.fl_str_mv Argentine Regional Student Group
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
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instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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