Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts
- Autores
- Le, Phuong Thi; Makhalanyane, Thulani P.; Guerrero, Leandro Demián; Vikram, Surendra; Van De Peer, Yves; Cowan, Don A.
- Año de publicación
- 2016
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- Understanding microbial adaptation to environmental stressors is crucial for interpreting broader ecological patterns. In the most extreme hot and cold deserts, cryptic niche communities are thought to play key roles in ecosystem processes and represent excellent model systems for investigating microbial responses to environmental stressors. However, relatively little is known about the genetic diversity underlying such functional processes in climatically extreme desert systems. This study presents the first comparative metagenome analysis of cyanobacteria-dominated hypolithic communities in hot (Namib Desert, Namibia) and cold (Miers Valley, Antarctica) hyperarid deserts. The most abundant phyla in both hypolith metagenomes were Actinobacteria, Proteobacteria, Cyanobacteria and Bacteroidetes with Cyanobacteria dominating in Antarctic hypoliths. However, no significant differences between the twometagenomeswere identified. The Antarctic hypolithicmetagenome displayed a high number of sequences assigned to sigma factors, replication,recombination andrepair, translation, ribosomal structure,andbiogenesis. In contrast, theNamibDesert metagenome showed a high abundance of sequences assigned to carbohydrate transport and metabolism. Metagenome data analysis also revealed significantdivergence inthe geneticdeterminantsof aminoacidandnucleotidemetabolismbetween these two metagenomes and those of soil from other polar deserts, hot deserts, and non-desert soils. Our results suggest extensive niche differentiation in hypolithic microbial communities from these two extreme environments and a high genetic capacity for survival under environmental extremes.
Fil: Le, Phuong Thi. University of Pretoria; Sudáfrica. Vlaams Instituut voor Biotechnologie; Bélgica. University of Ghent; Bélgica
Fil: Makhalanyane, Thulani P.. University of Pretoria; Sudáfrica
Fil: Guerrero, Leandro Demián. University of Pretoria; Sudáfrica. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; Argentina
Fil: Vikram, Surendra. University of Pretoria; Sudáfrica
Fil: Van De Peer, Yves. University of Pretoria; Sudáfrica. Vlaams Instituut voor Biotechnologie; Bélgica. University of Ghent; Bélgica
Fil: Cowan, Don A.. University of Pretoria; Sudáfrica - Materia
-
ANTARCTICA
BIOMES
COMPARATIVE METAGENOMICS
DESERTS
HYPOLITHS
NAMIB DESERT
SOILS
STRESS RESPONSE - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/79410
Ver los metadatos del registro completo
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oai:ri.conicet.gov.ar:11336/79410 |
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network_name_str |
CONICET Digital (CONICET) |
spelling |
Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid desertsLe, Phuong ThiMakhalanyane, Thulani P.Guerrero, Leandro DemiánVikram, SurendraVan De Peer, YvesCowan, Don A.ANTARCTICABIOMESCOMPARATIVE METAGENOMICSDESERTSHYPOLITHSNAMIB DESERTSOILSSTRESS RESPONSEhttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Understanding microbial adaptation to environmental stressors is crucial for interpreting broader ecological patterns. In the most extreme hot and cold deserts, cryptic niche communities are thought to play key roles in ecosystem processes and represent excellent model systems for investigating microbial responses to environmental stressors. However, relatively little is known about the genetic diversity underlying such functional processes in climatically extreme desert systems. This study presents the first comparative metagenome analysis of cyanobacteria-dominated hypolithic communities in hot (Namib Desert, Namibia) and cold (Miers Valley, Antarctica) hyperarid deserts. The most abundant phyla in both hypolith metagenomes were Actinobacteria, Proteobacteria, Cyanobacteria and Bacteroidetes with Cyanobacteria dominating in Antarctic hypoliths. However, no significant differences between the twometagenomeswere identified. The Antarctic hypolithicmetagenome displayed a high number of sequences assigned to sigma factors, replication,recombination andrepair, translation, ribosomal structure,andbiogenesis. In contrast, theNamibDesert metagenome showed a high abundance of sequences assigned to carbohydrate transport and metabolism. Metagenome data analysis also revealed significantdivergence inthe geneticdeterminantsof aminoacidandnucleotidemetabolismbetween these two metagenomes and those of soil from other polar deserts, hot deserts, and non-desert soils. Our results suggest extensive niche differentiation in hypolithic microbial communities from these two extreme environments and a high genetic capacity for survival under environmental extremes.Fil: Le, Phuong Thi. University of Pretoria; Sudáfrica. Vlaams Instituut voor Biotechnologie; Bélgica. University of Ghent; BélgicaFil: Makhalanyane, Thulani P.. University of Pretoria; SudáfricaFil: Guerrero, Leandro Demián. University of Pretoria; Sudáfrica. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; ArgentinaFil: Vikram, Surendra. University of Pretoria; SudáfricaFil: Van De Peer, Yves. University of Pretoria; Sudáfrica. Vlaams Instituut voor Biotechnologie; Bélgica. University of Ghent; BélgicaFil: Cowan, Don A.. University of Pretoria; SudáfricaOxford University Press2016-08info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/79410Le, Phuong Thi; Makhalanyane, Thulani P.; Guerrero, Leandro Demián; Vikram, Surendra; Van De Peer, Yves; et al.; Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts; Oxford University Press; Genome Biology and Evolution; 8; 9; 8-2016; 2737-27471759-6653CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/gbe/article/8/9/2737/2236390info:eu-repo/semantics/altIdentifier/doi/10.1093/gbe/evw189info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-29T09:35:53Zoai:ri.conicet.gov.ar:11336/79410instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-29 09:35:53.953CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts |
title |
Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts |
spellingShingle |
Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts Le, Phuong Thi ANTARCTICA BIOMES COMPARATIVE METAGENOMICS DESERTS HYPOLITHS NAMIB DESERT SOILS STRESS RESPONSE |
title_short |
Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts |
title_full |
Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts |
title_fullStr |
Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts |
title_full_unstemmed |
Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts |
title_sort |
Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts |
dc.creator.none.fl_str_mv |
Le, Phuong Thi Makhalanyane, Thulani P. Guerrero, Leandro Demián Vikram, Surendra Van De Peer, Yves Cowan, Don A. |
author |
Le, Phuong Thi |
author_facet |
Le, Phuong Thi Makhalanyane, Thulani P. Guerrero, Leandro Demián Vikram, Surendra Van De Peer, Yves Cowan, Don A. |
author_role |
author |
author2 |
Makhalanyane, Thulani P. Guerrero, Leandro Demián Vikram, Surendra Van De Peer, Yves Cowan, Don A. |
author2_role |
author author author author author |
dc.subject.none.fl_str_mv |
ANTARCTICA BIOMES COMPARATIVE METAGENOMICS DESERTS HYPOLITHS NAMIB DESERT SOILS STRESS RESPONSE |
topic |
ANTARCTICA BIOMES COMPARATIVE METAGENOMICS DESERTS HYPOLITHS NAMIB DESERT SOILS STRESS RESPONSE |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.6 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
Understanding microbial adaptation to environmental stressors is crucial for interpreting broader ecological patterns. In the most extreme hot and cold deserts, cryptic niche communities are thought to play key roles in ecosystem processes and represent excellent model systems for investigating microbial responses to environmental stressors. However, relatively little is known about the genetic diversity underlying such functional processes in climatically extreme desert systems. This study presents the first comparative metagenome analysis of cyanobacteria-dominated hypolithic communities in hot (Namib Desert, Namibia) and cold (Miers Valley, Antarctica) hyperarid deserts. The most abundant phyla in both hypolith metagenomes were Actinobacteria, Proteobacteria, Cyanobacteria and Bacteroidetes with Cyanobacteria dominating in Antarctic hypoliths. However, no significant differences between the twometagenomeswere identified. The Antarctic hypolithicmetagenome displayed a high number of sequences assigned to sigma factors, replication,recombination andrepair, translation, ribosomal structure,andbiogenesis. In contrast, theNamibDesert metagenome showed a high abundance of sequences assigned to carbohydrate transport and metabolism. Metagenome data analysis also revealed significantdivergence inthe geneticdeterminantsof aminoacidandnucleotidemetabolismbetween these two metagenomes and those of soil from other polar deserts, hot deserts, and non-desert soils. Our results suggest extensive niche differentiation in hypolithic microbial communities from these two extreme environments and a high genetic capacity for survival under environmental extremes. Fil: Le, Phuong Thi. University of Pretoria; Sudáfrica. Vlaams Instituut voor Biotechnologie; Bélgica. University of Ghent; Bélgica Fil: Makhalanyane, Thulani P.. University of Pretoria; Sudáfrica Fil: Guerrero, Leandro Demián. University of Pretoria; Sudáfrica. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres"; Argentina Fil: Vikram, Surendra. University of Pretoria; Sudáfrica Fil: Van De Peer, Yves. University of Pretoria; Sudáfrica. Vlaams Instituut voor Biotechnologie; Bélgica. University of Ghent; Bélgica Fil: Cowan, Don A.. University of Pretoria; Sudáfrica |
description |
Understanding microbial adaptation to environmental stressors is crucial for interpreting broader ecological patterns. In the most extreme hot and cold deserts, cryptic niche communities are thought to play key roles in ecosystem processes and represent excellent model systems for investigating microbial responses to environmental stressors. However, relatively little is known about the genetic diversity underlying such functional processes in climatically extreme desert systems. This study presents the first comparative metagenome analysis of cyanobacteria-dominated hypolithic communities in hot (Namib Desert, Namibia) and cold (Miers Valley, Antarctica) hyperarid deserts. The most abundant phyla in both hypolith metagenomes were Actinobacteria, Proteobacteria, Cyanobacteria and Bacteroidetes with Cyanobacteria dominating in Antarctic hypoliths. However, no significant differences between the twometagenomeswere identified. The Antarctic hypolithicmetagenome displayed a high number of sequences assigned to sigma factors, replication,recombination andrepair, translation, ribosomal structure,andbiogenesis. In contrast, theNamibDesert metagenome showed a high abundance of sequences assigned to carbohydrate transport and metabolism. Metagenome data analysis also revealed significantdivergence inthe geneticdeterminantsof aminoacidandnucleotidemetabolismbetween these two metagenomes and those of soil from other polar deserts, hot deserts, and non-desert soils. Our results suggest extensive niche differentiation in hypolithic microbial communities from these two extreme environments and a high genetic capacity for survival under environmental extremes. |
publishDate |
2016 |
dc.date.none.fl_str_mv |
2016-08 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/79410 Le, Phuong Thi; Makhalanyane, Thulani P.; Guerrero, Leandro Demián; Vikram, Surendra; Van De Peer, Yves; et al.; Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts; Oxford University Press; Genome Biology and Evolution; 8; 9; 8-2016; 2737-2747 1759-6653 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/79410 |
identifier_str_mv |
Le, Phuong Thi; Makhalanyane, Thulani P.; Guerrero, Leandro Demián; Vikram, Surendra; Van De Peer, Yves; et al.; Comparative metagenomic analysis reveals mechanisms for stress response in hypoliths from extreme hyperarid deserts; Oxford University Press; Genome Biology and Evolution; 8; 9; 8-2016; 2737-2747 1759-6653 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/url/https://academic.oup.com/gbe/article/8/9/2737/2236390 info:eu-repo/semantics/altIdentifier/doi/10.1093/gbe/evw189 |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
Oxford University Press |
publisher.none.fl_str_mv |
Oxford University Press |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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1844613121847590912 |
score |
13.070432 |