Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)

Autores
Burke, Sean V.; Wysocki, William P.; Zuloaga, Fernando Omar; Craine, Joseph M.; Pires, J. Chris; Edger, Patrick P.; Mayfield Jones, Dustin; Clark, Lynn G.; Kelchner, Scot A.; Duvall, Melvin R.
Año de publicación
2016
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Background: Panicoideae are the second largest subfamily in Poaceae (grass family), with 212 genera and approximately 3316 species. Previous studies have begun to reveal relationships within the subfamily, but largely lack resolution and/or robust support for certain tribal and subtribal groups. This study aims to resolve these relationships, as well as characterize a putative mitochondrial insert in one linage. Results: 35 newly sequenced Panicoideae plastomes were combined in a phylogenomic study with 37 other species: 15 Panicoideae and 22 from outgroups. A robust Panicoideae topology largely congruent with previous studies was obtained, but with some incongruences with previously reported subtribal relationships. A mitochondrial DNA (mtDNA) to plastid DNA (ptDNA) transfer was discovered in the Paspalum lineage. Conclusions: The phylogenomic analysis returned a topology that largely supports previous studies. Five previously recognized subtribes appear on the topology to be non-monophyletic. Additionally, evidence for mtDNA to ptDNA transfer was identified in both Paspalum fimbriatum and P. dilatatum, and suggests a single rare event that took place in a common progenitor. Finally, the framework from this study can guide larger whole plastome sampling to discern the relationships in Cyperochloeae, Steyermarkochloeae, Gynerieae, and other incertae sedis taxa that are weakly supported or unresolved.
Fil: Burke, Sean V.. Northern Illinois University; Estados Unidos
Fil: Wysocki, William P.. Northern Illinois University; Estados Unidos
Fil: Zuloaga, Fernando Omar. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; Argentina
Fil: Craine, Joseph M.. Jonah Ventures; Estados Unidos
Fil: Pires, J. Chris. University of Missouri; Estados Unidos
Fil: Edger, Patrick P.. Michigan State University; Estados Unidos
Fil: Mayfield Jones, Dustin. Donald Danforth Plant Science Center; Estados Unidos
Fil: Clark, Lynn G.. Iowa State University; Estados Unidos
Fil: Kelchner, Scot A.. University of Idaho; Estados Unidos
Fil: Duvall, Melvin R.. Northern Illinois University; Estados Unidos
Materia
Grasses
mtDNA
Next generation sequencing
Panicoideae
Paspalum
Phylogenomics
Plastome
Poaceae
ptDNA
Subtribal systematics
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/44231
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/44231
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)Burke, Sean V.Wysocki, William P.Zuloaga, Fernando OmarCraine, Joseph M.Pires, J. ChrisEdger, Patrick P.Mayfield Jones, DustinClark, Lynn G.Kelchner, Scot A.Duvall, Melvin R.GrassesmtDNANext generation sequencingPanicoideaePaspalumPhylogenomicsPlastomePoaceaeptDNASubtribal systematicshttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Background: Panicoideae are the second largest subfamily in Poaceae (grass family), with 212 genera and approximately 3316 species. Previous studies have begun to reveal relationships within the subfamily, but largely lack resolution and/or robust support for certain tribal and subtribal groups. This study aims to resolve these relationships, as well as characterize a putative mitochondrial insert in one linage. Results: 35 newly sequenced Panicoideae plastomes were combined in a phylogenomic study with 37 other species: 15 Panicoideae and 22 from outgroups. A robust Panicoideae topology largely congruent with previous studies was obtained, but with some incongruences with previously reported subtribal relationships. A mitochondrial DNA (mtDNA) to plastid DNA (ptDNA) transfer was discovered in the Paspalum lineage. Conclusions: The phylogenomic analysis returned a topology that largely supports previous studies. Five previously recognized subtribes appear on the topology to be non-monophyletic. Additionally, evidence for mtDNA to ptDNA transfer was identified in both Paspalum fimbriatum and P. dilatatum, and suggests a single rare event that took place in a common progenitor. Finally, the framework from this study can guide larger whole plastome sampling to discern the relationships in Cyperochloeae, Steyermarkochloeae, Gynerieae, and other incertae sedis taxa that are weakly supported or unresolved.Fil: Burke, Sean V.. Northern Illinois University; Estados UnidosFil: Wysocki, William P.. Northern Illinois University; Estados UnidosFil: Zuloaga, Fernando Omar. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; ArgentinaFil: Craine, Joseph M.. Jonah Ventures; Estados UnidosFil: Pires, J. Chris. University of Missouri; Estados UnidosFil: Edger, Patrick P.. Michigan State University; Estados UnidosFil: Mayfield Jones, Dustin. Donald Danforth Plant Science Center; Estados UnidosFil: Clark, Lynn G.. Iowa State University; Estados UnidosFil: Kelchner, Scot A.. University of Idaho; Estados UnidosFil: Duvall, Melvin R.. Northern Illinois University; Estados UnidosBioMed Central2016-06info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/44231Burke, Sean V.; Wysocki, William P.; Zuloaga, Fernando Omar; Craine, Joseph M.; Pires, J. Chris; et al.; Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae); BioMed Central; BMC Plant Biology; 16; 6-2016; 1-11; 1401471-2229CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1186/s12870-016-0823-3info:eu-repo/semantics/altIdentifier/url/https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-016-0823-3info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T14:20:57Zoai:ri.conicet.gov.ar:11336/44231instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 14:20:58.052CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
title Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
spellingShingle Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
Burke, Sean V.
Grasses
mtDNA
Next generation sequencing
Panicoideae
Paspalum
Phylogenomics
Plastome
Poaceae
ptDNA
Subtribal systematics
title_short Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
title_full Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
title_fullStr Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
title_full_unstemmed Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
title_sort Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae)
dc.creator.none.fl_str_mv Burke, Sean V.
Wysocki, William P.
Zuloaga, Fernando Omar
Craine, Joseph M.
Pires, J. Chris
Edger, Patrick P.
Mayfield Jones, Dustin
Clark, Lynn G.
Kelchner, Scot A.
Duvall, Melvin R.
author Burke, Sean V.
author_facet Burke, Sean V.
Wysocki, William P.
Zuloaga, Fernando Omar
Craine, Joseph M.
Pires, J. Chris
Edger, Patrick P.
Mayfield Jones, Dustin
Clark, Lynn G.
Kelchner, Scot A.
Duvall, Melvin R.
author_role author
author2 Wysocki, William P.
Zuloaga, Fernando Omar
Craine, Joseph M.
Pires, J. Chris
Edger, Patrick P.
Mayfield Jones, Dustin
Clark, Lynn G.
Kelchner, Scot A.
Duvall, Melvin R.
author2_role author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Grasses
mtDNA
Next generation sequencing
Panicoideae
Paspalum
Phylogenomics
Plastome
Poaceae
ptDNA
Subtribal systematics
topic Grasses
mtDNA
Next generation sequencing
Panicoideae
Paspalum
Phylogenomics
Plastome
Poaceae
ptDNA
Subtribal systematics
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Background: Panicoideae are the second largest subfamily in Poaceae (grass family), with 212 genera and approximately 3316 species. Previous studies have begun to reveal relationships within the subfamily, but largely lack resolution and/or robust support for certain tribal and subtribal groups. This study aims to resolve these relationships, as well as characterize a putative mitochondrial insert in one linage. Results: 35 newly sequenced Panicoideae plastomes were combined in a phylogenomic study with 37 other species: 15 Panicoideae and 22 from outgroups. A robust Panicoideae topology largely congruent with previous studies was obtained, but with some incongruences with previously reported subtribal relationships. A mitochondrial DNA (mtDNA) to plastid DNA (ptDNA) transfer was discovered in the Paspalum lineage. Conclusions: The phylogenomic analysis returned a topology that largely supports previous studies. Five previously recognized subtribes appear on the topology to be non-monophyletic. Additionally, evidence for mtDNA to ptDNA transfer was identified in both Paspalum fimbriatum and P. dilatatum, and suggests a single rare event that took place in a common progenitor. Finally, the framework from this study can guide larger whole plastome sampling to discern the relationships in Cyperochloeae, Steyermarkochloeae, Gynerieae, and other incertae sedis taxa that are weakly supported or unresolved.
Fil: Burke, Sean V.. Northern Illinois University; Estados Unidos
Fil: Wysocki, William P.. Northern Illinois University; Estados Unidos
Fil: Zuloaga, Fernando Omar. Consejo Nacional de Investigaciones Científicas y Técnicas. Instituto de Botánica Darwinion. Academia Nacional de Ciencias Exactas, Físicas y Naturales. Instituto de Botánica Darwinion; Argentina
Fil: Craine, Joseph M.. Jonah Ventures; Estados Unidos
Fil: Pires, J. Chris. University of Missouri; Estados Unidos
Fil: Edger, Patrick P.. Michigan State University; Estados Unidos
Fil: Mayfield Jones, Dustin. Donald Danforth Plant Science Center; Estados Unidos
Fil: Clark, Lynn G.. Iowa State University; Estados Unidos
Fil: Kelchner, Scot A.. University of Idaho; Estados Unidos
Fil: Duvall, Melvin R.. Northern Illinois University; Estados Unidos
description Background: Panicoideae are the second largest subfamily in Poaceae (grass family), with 212 genera and approximately 3316 species. Previous studies have begun to reveal relationships within the subfamily, but largely lack resolution and/or robust support for certain tribal and subtribal groups. This study aims to resolve these relationships, as well as characterize a putative mitochondrial insert in one linage. Results: 35 newly sequenced Panicoideae plastomes were combined in a phylogenomic study with 37 other species: 15 Panicoideae and 22 from outgroups. A robust Panicoideae topology largely congruent with previous studies was obtained, but with some incongruences with previously reported subtribal relationships. A mitochondrial DNA (mtDNA) to plastid DNA (ptDNA) transfer was discovered in the Paspalum lineage. Conclusions: The phylogenomic analysis returned a topology that largely supports previous studies. Five previously recognized subtribes appear on the topology to be non-monophyletic. Additionally, evidence for mtDNA to ptDNA transfer was identified in both Paspalum fimbriatum and P. dilatatum, and suggests a single rare event that took place in a common progenitor. Finally, the framework from this study can guide larger whole plastome sampling to discern the relationships in Cyperochloeae, Steyermarkochloeae, Gynerieae, and other incertae sedis taxa that are weakly supported or unresolved.
publishDate 2016
dc.date.none.fl_str_mv 2016-06
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/44231
Burke, Sean V.; Wysocki, William P.; Zuloaga, Fernando Omar; Craine, Joseph M.; Pires, J. Chris; et al.; Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae); BioMed Central; BMC Plant Biology; 16; 6-2016; 1-11; 140
1471-2229
CONICET Digital
CONICET
url http://hdl.handle.net/11336/44231
identifier_str_mv Burke, Sean V.; Wysocki, William P.; Zuloaga, Fernando Omar; Craine, Joseph M.; Pires, J. Chris; et al.; Evolutionary relationships in Panicoid grasses based on plastome phylogenomics (Panicoideae; Poaceae); BioMed Central; BMC Plant Biology; 16; 6-2016; 1-11; 140
1471-2229
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1186/s12870-016-0823-3
info:eu-repo/semantics/altIdentifier/url/https://bmcplantbiol.biomedcentral.com/articles/10.1186/s12870-016-0823-3
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
application/pdf
dc.publisher.none.fl_str_mv BioMed Central
publisher.none.fl_str_mv BioMed Central
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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score 13.22299

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