Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields
- Autores
- Ruiz Hidalgo, José; Brandan, Silvia Antonia
- Año de publicación
- 2020
- Idioma
- inglés
- Tipo de recurso
- artículo
- Estado
- versión publicada
- Descripción
- B3LYP/6-311++G** calculations have been combined with the scaled quantum mechanical force field (SQMFF) methodology to study structural and vibrational properties of anticonvulsant topiramate (TPM) agent. The 123 vibration modes expected for TPM were completely assigned, considering two harmonic force fields. In one case, C2V symmetries were considered for both SO2 and NH2 groups, while in the other one C2V and C3V symmetries for the NH2 and SO3 groups, respectively. The calculated harmonic vibrational frequencies are consistent with the experimental IR and Raman spectra in the solid phase. Very good concordances were found between the theoretical structures in gas phase and aqueous solution and the corresponding experimental reported. Thus, the fused five-membered ring in TPM produces that the pyranose ring adopts distorted twist-boat conformation, as was experimentally observed. In solution, all calculations were performed with the self-consistent reaction force (SCRF) method by the integral equation formalism variant polarised continuum (IEFPCM) and universal solvation model density (SMD) models. The corrected solvation energy value for TPM in aqueous solution by total non-electrostatic terms and by ZPVE is-1066.10 kJ/mol. The bond orders have evidenced that the three O atoms are not linked of the same form to S atom. Hence, the S atom of TPM is practically tetra-coordinate in both media, as evidenced by the high negative MK and NPA charges on the O atoms linked to it. The AIM study supports the higher stability of TPM in the gas phase while the NBO calculations suggest higher stability in solution. Gap values support the higher reactivity of TPM in solution than in the gas phase. The scaled force constant for both cases are reported for the first time. Comparisons of predicted1H-and13C-NMR spectra with the corresponding experimental ones reveal very good concordances.
Fil: Ruiz Hidalgo, José. Universidad Nacional de Tucuman. Facultad de Bioquimica, Quimica y Farmacia. Instituto de Quimica Inorganica. Cátedra de Química General.; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán; Argentina
Fil: Brandan, Silvia Antonia. Universidad Nacional de Tucuman. Facultad de Bioquimica, Quimica y Farmacia. Instituto de Quimica Inorganica. Cátedra de Química General.; Argentina - Materia
-
DFT CALCULATIONS
MOLECULAR STRUCTURE
TOPIRAMATE
VIBRATIONAL SPECTRA - Nivel de accesibilidad
- acceso abierto
- Condiciones de uso
- https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
- Repositorio
- Institución
- Consejo Nacional de Investigaciones Científicas y Técnicas
- OAI Identificador
- oai:ri.conicet.gov.ar:11336/140841
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Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fieldsRuiz Hidalgo, JoséBrandan, Silvia AntoniaDFT CALCULATIONSMOLECULAR STRUCTURETOPIRAMATEVIBRATIONAL SPECTRAhttps://purl.org/becyt/ford/1.4https://purl.org/becyt/ford/1B3LYP/6-311++G** calculations have been combined with the scaled quantum mechanical force field (SQMFF) methodology to study structural and vibrational properties of anticonvulsant topiramate (TPM) agent. The 123 vibration modes expected for TPM were completely assigned, considering two harmonic force fields. In one case, C2V symmetries were considered for both SO2 and NH2 groups, while in the other one C2V and C3V symmetries for the NH2 and SO3 groups, respectively. The calculated harmonic vibrational frequencies are consistent with the experimental IR and Raman spectra in the solid phase. Very good concordances were found between the theoretical structures in gas phase and aqueous solution and the corresponding experimental reported. Thus, the fused five-membered ring in TPM produces that the pyranose ring adopts distorted twist-boat conformation, as was experimentally observed. In solution, all calculations were performed with the self-consistent reaction force (SCRF) method by the integral equation formalism variant polarised continuum (IEFPCM) and universal solvation model density (SMD) models. The corrected solvation energy value for TPM in aqueous solution by total non-electrostatic terms and by ZPVE is-1066.10 kJ/mol. The bond orders have evidenced that the three O atoms are not linked of the same form to S atom. Hence, the S atom of TPM is practically tetra-coordinate in both media, as evidenced by the high negative MK and NPA charges on the O atoms linked to it. The AIM study supports the higher stability of TPM in the gas phase while the NBO calculations suggest higher stability in solution. Gap values support the higher reactivity of TPM in solution than in the gas phase. The scaled force constant for both cases are reported for the first time. Comparisons of predicted1H-and13C-NMR spectra with the corresponding experimental ones reveal very good concordances.Fil: Ruiz Hidalgo, José. Universidad Nacional de Tucuman. Facultad de Bioquimica, Quimica y Farmacia. Instituto de Quimica Inorganica. Cátedra de Química General.; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán; ArgentinaFil: Brandan, Silvia Antonia. Universidad Nacional de Tucuman. Facultad de Bioquimica, Quimica y Farmacia. Instituto de Quimica Inorganica. Cátedra de Química General.; ArgentinaAMG Transcend Association2020-09info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/140841Ruiz Hidalgo, José; Brandan, Silvia Antonia; Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields; AMG Transcend Association; Biointerface Research in Applied Chemistry; 11; 3; 9-2020; 9880-99032069-5837CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.33263/BRIAC113.98809903info:eu-repo/semantics/altIdentifier/url/https://biointerfaceresearch.com/wp-content/uploads/2020/09/20695837113.98809903.pdfinfo:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-17T11:57:38Zoai:ri.conicet.gov.ar:11336/140841instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-17 11:57:38.831CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse |
dc.title.none.fl_str_mv |
Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields |
title |
Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields |
spellingShingle |
Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields Ruiz Hidalgo, José DFT CALCULATIONS MOLECULAR STRUCTURE TOPIRAMATE VIBRATIONAL SPECTRA |
title_short |
Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields |
title_full |
Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields |
title_fullStr |
Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields |
title_full_unstemmed |
Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields |
title_sort |
Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields |
dc.creator.none.fl_str_mv |
Ruiz Hidalgo, José Brandan, Silvia Antonia |
author |
Ruiz Hidalgo, José |
author_facet |
Ruiz Hidalgo, José Brandan, Silvia Antonia |
author_role |
author |
author2 |
Brandan, Silvia Antonia |
author2_role |
author |
dc.subject.none.fl_str_mv |
DFT CALCULATIONS MOLECULAR STRUCTURE TOPIRAMATE VIBRATIONAL SPECTRA |
topic |
DFT CALCULATIONS MOLECULAR STRUCTURE TOPIRAMATE VIBRATIONAL SPECTRA |
purl_subject.fl_str_mv |
https://purl.org/becyt/ford/1.4 https://purl.org/becyt/ford/1 |
dc.description.none.fl_txt_mv |
B3LYP/6-311++G** calculations have been combined with the scaled quantum mechanical force field (SQMFF) methodology to study structural and vibrational properties of anticonvulsant topiramate (TPM) agent. The 123 vibration modes expected for TPM were completely assigned, considering two harmonic force fields. In one case, C2V symmetries were considered for both SO2 and NH2 groups, while in the other one C2V and C3V symmetries for the NH2 and SO3 groups, respectively. The calculated harmonic vibrational frequencies are consistent with the experimental IR and Raman spectra in the solid phase. Very good concordances were found between the theoretical structures in gas phase and aqueous solution and the corresponding experimental reported. Thus, the fused five-membered ring in TPM produces that the pyranose ring adopts distorted twist-boat conformation, as was experimentally observed. In solution, all calculations were performed with the self-consistent reaction force (SCRF) method by the integral equation formalism variant polarised continuum (IEFPCM) and universal solvation model density (SMD) models. The corrected solvation energy value for TPM in aqueous solution by total non-electrostatic terms and by ZPVE is-1066.10 kJ/mol. The bond orders have evidenced that the three O atoms are not linked of the same form to S atom. Hence, the S atom of TPM is practically tetra-coordinate in both media, as evidenced by the high negative MK and NPA charges on the O atoms linked to it. The AIM study supports the higher stability of TPM in the gas phase while the NBO calculations suggest higher stability in solution. Gap values support the higher reactivity of TPM in solution than in the gas phase. The scaled force constant for both cases are reported for the first time. Comparisons of predicted1H-and13C-NMR spectra with the corresponding experimental ones reveal very good concordances. Fil: Ruiz Hidalgo, José. Universidad Nacional de Tucuman. Facultad de Bioquimica, Quimica y Farmacia. Instituto de Quimica Inorganica. Cátedra de Química General.; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Tucumán; Argentina Fil: Brandan, Silvia Antonia. Universidad Nacional de Tucuman. Facultad de Bioquimica, Quimica y Farmacia. Instituto de Quimica Inorganica. Cátedra de Química General.; Argentina |
description |
B3LYP/6-311++G** calculations have been combined with the scaled quantum mechanical force field (SQMFF) methodology to study structural and vibrational properties of anticonvulsant topiramate (TPM) agent. The 123 vibration modes expected for TPM were completely assigned, considering two harmonic force fields. In one case, C2V symmetries were considered for both SO2 and NH2 groups, while in the other one C2V and C3V symmetries for the NH2 and SO3 groups, respectively. The calculated harmonic vibrational frequencies are consistent with the experimental IR and Raman spectra in the solid phase. Very good concordances were found between the theoretical structures in gas phase and aqueous solution and the corresponding experimental reported. Thus, the fused five-membered ring in TPM produces that the pyranose ring adopts distorted twist-boat conformation, as was experimentally observed. In solution, all calculations were performed with the self-consistent reaction force (SCRF) method by the integral equation formalism variant polarised continuum (IEFPCM) and universal solvation model density (SMD) models. The corrected solvation energy value for TPM in aqueous solution by total non-electrostatic terms and by ZPVE is-1066.10 kJ/mol. The bond orders have evidenced that the three O atoms are not linked of the same form to S atom. Hence, the S atom of TPM is practically tetra-coordinate in both media, as evidenced by the high negative MK and NPA charges on the O atoms linked to it. The AIM study supports the higher stability of TPM in the gas phase while the NBO calculations suggest higher stability in solution. Gap values support the higher reactivity of TPM in solution than in the gas phase. The scaled force constant for both cases are reported for the first time. Comparisons of predicted1H-and13C-NMR spectra with the corresponding experimental ones reveal very good concordances. |
publishDate |
2020 |
dc.date.none.fl_str_mv |
2020-09 |
dc.type.none.fl_str_mv |
info:eu-repo/semantics/article info:eu-repo/semantics/publishedVersion http://purl.org/coar/resource_type/c_6501 info:ar-repo/semantics/articulo |
format |
article |
status_str |
publishedVersion |
dc.identifier.none.fl_str_mv |
http://hdl.handle.net/11336/140841 Ruiz Hidalgo, José; Brandan, Silvia Antonia; Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields; AMG Transcend Association; Biointerface Research in Applied Chemistry; 11; 3; 9-2020; 9880-9903 2069-5837 CONICET Digital CONICET |
url |
http://hdl.handle.net/11336/140841 |
identifier_str_mv |
Ruiz Hidalgo, José; Brandan, Silvia Antonia; Structural study and vibrational assignments of anticonvulsant topiramate by using dft calculations and two harmonic force fields; AMG Transcend Association; Biointerface Research in Applied Chemistry; 11; 3; 9-2020; 9880-9903 2069-5837 CONICET Digital CONICET |
dc.language.none.fl_str_mv |
eng |
language |
eng |
dc.relation.none.fl_str_mv |
info:eu-repo/semantics/altIdentifier/doi/10.33263/BRIAC113.98809903 info:eu-repo/semantics/altIdentifier/url/https://biointerfaceresearch.com/wp-content/uploads/2020/09/20695837113.98809903.pdf |
dc.rights.none.fl_str_mv |
info:eu-repo/semantics/openAccess https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
eu_rights_str_mv |
openAccess |
rights_invalid_str_mv |
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/ |
dc.format.none.fl_str_mv |
application/pdf application/pdf |
dc.publisher.none.fl_str_mv |
AMG Transcend Association |
publisher.none.fl_str_mv |
AMG Transcend Association |
dc.source.none.fl_str_mv |
reponame:CONICET Digital (CONICET) instname:Consejo Nacional de Investigaciones Científicas y Técnicas |
reponame_str |
CONICET Digital (CONICET) |
collection |
CONICET Digital (CONICET) |
instname_str |
Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.name.fl_str_mv |
CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas |
repository.mail.fl_str_mv |
dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar |
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1843606920001224704 |
score |
13.000565 |