Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management

Autores
Ishizuka, Tamylin Kaori; Goes Cordeiro, Erick Mauricio; Alves Pereira, Alessandro; de Araújo Batista, Carlos Eduardo; Murúa, María Gabriela; Baldin Pinheiro, José; Sethi, Amit; Nagoshi, Rodney N.; Foresti, Josemar; Zucchi, Maria Imaculada
Año de publicación
2023
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The fall armyworm (FAW), Spodoptera frugiperda, is a significant pest of many crops in the world and it is native to the Americas, where the species has shown the ability to rapidly evolve resistance to insecticides and transgenic plants. Despite the importance of this species, there is a gap in the knowledge regarding the genetic structure of FAW in South America. Here, we examined the genetic diversity of FAW populations across a wide agricultural area of Brazil and Argentina using a Genotyping-by-Sequencing (GBS) approach. We also characterized samples by their host strain based on mitochondrial and Z-linked genetic markers. The GBS methodology enabled us to discover 3309 SNPs, including neutral and outlier markers. Data showed significant genetic structure between Brazil and Argentina populations, and also among the Argentinian ecoregions. Populations inside Brazil showed little genetic differentiation indicating high gene flow among locations and confirming that structure is related to the presence of corn and rice strains. Outlier analysis indicated 456 loci putatively under selection, including genes possibly related to resistance evolution. This study provides clarification of the population genetic structure of FAW in South America and highlights the importance of genomic research to understand the risks of spread of resistance genes.
Fil: Ishizuka, Tamylin Kaori. Universidade Estadual de Campinas; Brasil
Fil: Goes Cordeiro, Erick Mauricio. Universidade de Sao Paulo; Brasil
Fil: Alves Pereira, Alessandro. Universidade Estadual de Campinas; Brasil
Fil: de Araújo Batista, Carlos Eduardo. Universidade de Sao Paulo; Brasil
Fil: Murúa, María Gabriela. Universidad Nacional de Tucumán. Instituto de Bioprospección y Fisiología Vegetal. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet Noa Sur. Instituto de Bioprospección y Fisiología Vegetal; Argentina
Fil: Baldin Pinheiro, José. Universidade de Sao Paulo; Brasil
Fil: Sethi, Amit. No especifíca;
Fil: Nagoshi, Rodney N.. No especifíca;
Fil: Foresti, Josemar. No especifíca;
Fil: Zucchi, Maria Imaculada. Universidade Estadual de Campinas; Brasil
Materia
SPODOPTERA FRUGIPERDA
HOST STRAIN
RESISTANCE GENES
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/232972
Acceder
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oai_identifier_str oai:ri.conicet.gov.ar:11336/232972
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest managementIshizuka, Tamylin KaoriGoes Cordeiro, Erick MauricioAlves Pereira, Alessandrode Araújo Batista, Carlos EduardoMurúa, María GabrielaBaldin Pinheiro, JoséSethi, AmitNagoshi, Rodney N.Foresti, JosemarZucchi, Maria ImaculadaSPODOPTERA FRUGIPERDAHOST STRAINRESISTANCE GENEShttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1The fall armyworm (FAW), Spodoptera frugiperda, is a significant pest of many crops in the world and it is native to the Americas, where the species has shown the ability to rapidly evolve resistance to insecticides and transgenic plants. Despite the importance of this species, there is a gap in the knowledge regarding the genetic structure of FAW in South America. Here, we examined the genetic diversity of FAW populations across a wide agricultural area of Brazil and Argentina using a Genotyping-by-Sequencing (GBS) approach. We also characterized samples by their host strain based on mitochondrial and Z-linked genetic markers. The GBS methodology enabled us to discover 3309 SNPs, including neutral and outlier markers. Data showed significant genetic structure between Brazil and Argentina populations, and also among the Argentinian ecoregions. Populations inside Brazil showed little genetic differentiation indicating high gene flow among locations and confirming that structure is related to the presence of corn and rice strains. Outlier analysis indicated 456 loci putatively under selection, including genes possibly related to resistance evolution. This study provides clarification of the population genetic structure of FAW in South America and highlights the importance of genomic research to understand the risks of spread of resistance genes.Fil: Ishizuka, Tamylin Kaori. Universidade Estadual de Campinas; BrasilFil: Goes Cordeiro, Erick Mauricio. Universidade de Sao Paulo; BrasilFil: Alves Pereira, Alessandro. Universidade Estadual de Campinas; BrasilFil: de Araújo Batista, Carlos Eduardo. Universidade de Sao Paulo; BrasilFil: Murúa, María Gabriela. Universidad Nacional de Tucumán. Instituto de Bioprospección y Fisiología Vegetal. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet Noa Sur. Instituto de Bioprospección y Fisiología Vegetal; ArgentinaFil: Baldin Pinheiro, José. Universidade de Sao Paulo; BrasilFil: Sethi, Amit. No especifíca;Fil: Nagoshi, Rodney N.. No especifíca;Fil: Foresti, Josemar. No especifíca;Fil: Zucchi, Maria Imaculada. Universidade Estadual de Campinas; BrasilPublic Library of Science2023-04info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/232972Ishizuka, Tamylin Kaori; Goes Cordeiro, Erick Mauricio; Alves Pereira, Alessandro; de Araújo Batista, Carlos Eduardo; Murúa, María Gabriela; et al.; Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management; Public Library of Science; Plos One; 18; 4 4; 4-2023; 1-161932-6203CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0284587info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T15:18:37Zoai:ri.conicet.gov.ar:11336/232972instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 15:18:38.245CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management
title Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management
spellingShingle Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management
Ishizuka, Tamylin Kaori
SPODOPTERA FRUGIPERDA
HOST STRAIN
RESISTANCE GENES
title_short Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management
title_full Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management
title_fullStr Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management
title_full_unstemmed Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management
title_sort Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management
dc.creator.none.fl_str_mv Ishizuka, Tamylin Kaori
Goes Cordeiro, Erick Mauricio
Alves Pereira, Alessandro
de Araújo Batista, Carlos Eduardo
Murúa, María Gabriela
Baldin Pinheiro, José
Sethi, Amit
Nagoshi, Rodney N.
Foresti, Josemar
Zucchi, Maria Imaculada
author Ishizuka, Tamylin Kaori
author_facet Ishizuka, Tamylin Kaori
Goes Cordeiro, Erick Mauricio
Alves Pereira, Alessandro
de Araújo Batista, Carlos Eduardo
Murúa, María Gabriela
Baldin Pinheiro, José
Sethi, Amit
Nagoshi, Rodney N.
Foresti, Josemar
Zucchi, Maria Imaculada
author_role author
author2 Goes Cordeiro, Erick Mauricio
Alves Pereira, Alessandro
de Araújo Batista, Carlos Eduardo
Murúa, María Gabriela
Baldin Pinheiro, José
Sethi, Amit
Nagoshi, Rodney N.
Foresti, Josemar
Zucchi, Maria Imaculada
author2_role author
author
author
author
author
author
author
author
author
dc.subject.none.fl_str_mv SPODOPTERA FRUGIPERDA
HOST STRAIN
RESISTANCE GENES
topic SPODOPTERA FRUGIPERDA
HOST STRAIN
RESISTANCE GENES
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv The fall armyworm (FAW), Spodoptera frugiperda, is a significant pest of many crops in the world and it is native to the Americas, where the species has shown the ability to rapidly evolve resistance to insecticides and transgenic plants. Despite the importance of this species, there is a gap in the knowledge regarding the genetic structure of FAW in South America. Here, we examined the genetic diversity of FAW populations across a wide agricultural area of Brazil and Argentina using a Genotyping-by-Sequencing (GBS) approach. We also characterized samples by their host strain based on mitochondrial and Z-linked genetic markers. The GBS methodology enabled us to discover 3309 SNPs, including neutral and outlier markers. Data showed significant genetic structure between Brazil and Argentina populations, and also among the Argentinian ecoregions. Populations inside Brazil showed little genetic differentiation indicating high gene flow among locations and confirming that structure is related to the presence of corn and rice strains. Outlier analysis indicated 456 loci putatively under selection, including genes possibly related to resistance evolution. This study provides clarification of the population genetic structure of FAW in South America and highlights the importance of genomic research to understand the risks of spread of resistance genes.
Fil: Ishizuka, Tamylin Kaori. Universidade Estadual de Campinas; Brasil
Fil: Goes Cordeiro, Erick Mauricio. Universidade de Sao Paulo; Brasil
Fil: Alves Pereira, Alessandro. Universidade Estadual de Campinas; Brasil
Fil: de Araújo Batista, Carlos Eduardo. Universidade de Sao Paulo; Brasil
Fil: Murúa, María Gabriela. Universidad Nacional de Tucumán. Instituto de Bioprospección y Fisiología Vegetal. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet Noa Sur. Instituto de Bioprospección y Fisiología Vegetal; Argentina
Fil: Baldin Pinheiro, José. Universidade de Sao Paulo; Brasil
Fil: Sethi, Amit. No especifíca;
Fil: Nagoshi, Rodney N.. No especifíca;
Fil: Foresti, Josemar. No especifíca;
Fil: Zucchi, Maria Imaculada. Universidade Estadual de Campinas; Brasil
description The fall armyworm (FAW), Spodoptera frugiperda, is a significant pest of many crops in the world and it is native to the Americas, where the species has shown the ability to rapidly evolve resistance to insecticides and transgenic plants. Despite the importance of this species, there is a gap in the knowledge regarding the genetic structure of FAW in South America. Here, we examined the genetic diversity of FAW populations across a wide agricultural area of Brazil and Argentina using a Genotyping-by-Sequencing (GBS) approach. We also characterized samples by their host strain based on mitochondrial and Z-linked genetic markers. The GBS methodology enabled us to discover 3309 SNPs, including neutral and outlier markers. Data showed significant genetic structure between Brazil and Argentina populations, and also among the Argentinian ecoregions. Populations inside Brazil showed little genetic differentiation indicating high gene flow among locations and confirming that structure is related to the presence of corn and rice strains. Outlier analysis indicated 456 loci putatively under selection, including genes possibly related to resistance evolution. This study provides clarification of the population genetic structure of FAW in South America and highlights the importance of genomic research to understand the risks of spread of resistance genes.
publishDate 2023
dc.date.none.fl_str_mv 2023-04
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/232972
Ishizuka, Tamylin Kaori; Goes Cordeiro, Erick Mauricio; Alves Pereira, Alessandro; de Araújo Batista, Carlos Eduardo; Murúa, María Gabriela; et al.; Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management; Public Library of Science; Plos One; 18; 4 4; 4-2023; 1-16
1932-6203
CONICET Digital
CONICET
url http://hdl.handle.net/11336/232972
identifier_str_mv Ishizuka, Tamylin Kaori; Goes Cordeiro, Erick Mauricio; Alves Pereira, Alessandro; de Araújo Batista, Carlos Eduardo; Murúa, María Gabriela; et al.; Population genomics of fall armyworm by genotyping-by-sequencing: Implications for pest management; Public Library of Science; Plos One; 18; 4 4; 4-2023; 1-16
1932-6203
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1371/journal.pone.0284587
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Public Library of Science
publisher.none.fl_str_mv Public Library of Science
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1846083335373193216
score 13.22299

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