Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles

Autores
Pereira, Anieli G.; Sterli, Juliana; Moreira, Filipe R.R.; Schrago, Carlos G.
Año de publicación
2017
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Despite their complex evolutionary history and the rich fossil record, the higher level phylogeny and historical biogeography of living turtles have not been investigated in a comprehensive and statistical framework. To tackle these issues, we assembled a large molecular dataset, maximizing both taxonomic and gene sampling. As different models provide alternative biogeographical scenarios, we have explicitly tested such hypotheses in order to reconstruct a robust biogeographical history of Testudines. We scanned publicly available databases for nucleotide sequences and composed a dataset comprising 13 loci for 294 living species of Testudines, which accounts for all living genera and 85% of their extant species diversity. Phylogenetic relationships and species divergence times were estimated using a thorough evaluation of fossil information as calibration priors. We then carried out the analysis of historical biogeography of Testudines in a fully statistical framework. Our study recovered the first large-scale phylogeny of turtles with well-supported relationships following the topology proposed by phylogenomic works. Our dating result consistently indicated that the origin of the main clades, Pleurodira and Cryptodira, occurred in the early Jurassic. The phylogenetic and historical biogeographical inferences permitted us to clarify how geological events affected the evolutionary dynamics of crown turtles. For instance, our analyses support the hypothesis that the breakup of Pangaea would have driven the divergence between the cryptodiran and pleurodiran lineages. The reticulated pattern in the ancestral distribution of the cryptodiran lineage suggests a complex biogeographic history for the clade, which was supposedly related to the complex paleogeographic history of Laurasia. On the other hand, the biogeographical history of Pleurodira indicated a tight correlation with the paleogeography of the Gondwanan landmasses.
Fil: Pereira, Anieli G.. Universidade Federal do Rio de Janeiro; Brasil
Fil: Sterli, Juliana. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Museo Paleontológico Egidio Feruglio; Argentina
Fil: Moreira, Filipe R.R.. Universidade Federal do Rio de Janeiro; Brasil
Fil: Schrago, Carlos G.. Universidade Federal do Rio de Janeiro; Brasil
Materia
Biogeobears
Historical Biogeography
Jurassic
Phylogenomics
Statistical Biogeography
Testudines
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/41137

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spelling Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtlesPereira, Anieli G.Sterli, JulianaMoreira, Filipe R.R.Schrago, Carlos G.BiogeobearsHistorical BiogeographyJurassicPhylogenomicsStatistical BiogeographyTestudineshttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Despite their complex evolutionary history and the rich fossil record, the higher level phylogeny and historical biogeography of living turtles have not been investigated in a comprehensive and statistical framework. To tackle these issues, we assembled a large molecular dataset, maximizing both taxonomic and gene sampling. As different models provide alternative biogeographical scenarios, we have explicitly tested such hypotheses in order to reconstruct a robust biogeographical history of Testudines. We scanned publicly available databases for nucleotide sequences and composed a dataset comprising 13 loci for 294 living species of Testudines, which accounts for all living genera and 85% of their extant species diversity. Phylogenetic relationships and species divergence times were estimated using a thorough evaluation of fossil information as calibration priors. We then carried out the analysis of historical biogeography of Testudines in a fully statistical framework. Our study recovered the first large-scale phylogeny of turtles with well-supported relationships following the topology proposed by phylogenomic works. Our dating result consistently indicated that the origin of the main clades, Pleurodira and Cryptodira, occurred in the early Jurassic. The phylogenetic and historical biogeographical inferences permitted us to clarify how geological events affected the evolutionary dynamics of crown turtles. For instance, our analyses support the hypothesis that the breakup of Pangaea would have driven the divergence between the cryptodiran and pleurodiran lineages. The reticulated pattern in the ancestral distribution of the cryptodiran lineage suggests a complex biogeographic history for the clade, which was supposedly related to the complex paleogeographic history of Laurasia. On the other hand, the biogeographical history of Pleurodira indicated a tight correlation with the paleogeography of the Gondwanan landmasses.Fil: Pereira, Anieli G.. Universidade Federal do Rio de Janeiro; BrasilFil: Sterli, Juliana. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Museo Paleontológico Egidio Feruglio; ArgentinaFil: Moreira, Filipe R.R.. Universidade Federal do Rio de Janeiro; BrasilFil: Schrago, Carlos G.. Universidade Federal do Rio de Janeiro; BrasilAcademic Press Inc Elsevier Science2017-08info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/41137Pereira, Anieli G.; Sterli, Juliana; Moreira, Filipe R.R.; Schrago, Carlos G.; Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles; Academic Press Inc Elsevier Science; Molecular Phylogenetics and Evolution; 113; 8-2017; 59-661055-7903CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1016/j.ympev.2017.05.008info:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S1055790316304316info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-09-03T09:46:13Zoai:ri.conicet.gov.ar:11336/41137instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-09-03 09:46:13.534CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
title Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
spellingShingle Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
Pereira, Anieli G.
Biogeobears
Historical Biogeography
Jurassic
Phylogenomics
Statistical Biogeography
Testudines
title_short Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
title_full Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
title_fullStr Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
title_full_unstemmed Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
title_sort Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles
dc.creator.none.fl_str_mv Pereira, Anieli G.
Sterli, Juliana
Moreira, Filipe R.R.
Schrago, Carlos G.
author Pereira, Anieli G.
author_facet Pereira, Anieli G.
Sterli, Juliana
Moreira, Filipe R.R.
Schrago, Carlos G.
author_role author
author2 Sterli, Juliana
Moreira, Filipe R.R.
Schrago, Carlos G.
author2_role author
author
author
dc.subject.none.fl_str_mv Biogeobears
Historical Biogeography
Jurassic
Phylogenomics
Statistical Biogeography
Testudines
topic Biogeobears
Historical Biogeography
Jurassic
Phylogenomics
Statistical Biogeography
Testudines
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Despite their complex evolutionary history and the rich fossil record, the higher level phylogeny and historical biogeography of living turtles have not been investigated in a comprehensive and statistical framework. To tackle these issues, we assembled a large molecular dataset, maximizing both taxonomic and gene sampling. As different models provide alternative biogeographical scenarios, we have explicitly tested such hypotheses in order to reconstruct a robust biogeographical history of Testudines. We scanned publicly available databases for nucleotide sequences and composed a dataset comprising 13 loci for 294 living species of Testudines, which accounts for all living genera and 85% of their extant species diversity. Phylogenetic relationships and species divergence times were estimated using a thorough evaluation of fossil information as calibration priors. We then carried out the analysis of historical biogeography of Testudines in a fully statistical framework. Our study recovered the first large-scale phylogeny of turtles with well-supported relationships following the topology proposed by phylogenomic works. Our dating result consistently indicated that the origin of the main clades, Pleurodira and Cryptodira, occurred in the early Jurassic. The phylogenetic and historical biogeographical inferences permitted us to clarify how geological events affected the evolutionary dynamics of crown turtles. For instance, our analyses support the hypothesis that the breakup of Pangaea would have driven the divergence between the cryptodiran and pleurodiran lineages. The reticulated pattern in the ancestral distribution of the cryptodiran lineage suggests a complex biogeographic history for the clade, which was supposedly related to the complex paleogeographic history of Laurasia. On the other hand, the biogeographical history of Pleurodira indicated a tight correlation with the paleogeography of the Gondwanan landmasses.
Fil: Pereira, Anieli G.. Universidade Federal do Rio de Janeiro; Brasil
Fil: Sterli, Juliana. Consejo Nacional de Investigaciones Científicas y Técnicas; Argentina. Museo Paleontológico Egidio Feruglio; Argentina
Fil: Moreira, Filipe R.R.. Universidade Federal do Rio de Janeiro; Brasil
Fil: Schrago, Carlos G.. Universidade Federal do Rio de Janeiro; Brasil
description Despite their complex evolutionary history and the rich fossil record, the higher level phylogeny and historical biogeography of living turtles have not been investigated in a comprehensive and statistical framework. To tackle these issues, we assembled a large molecular dataset, maximizing both taxonomic and gene sampling. As different models provide alternative biogeographical scenarios, we have explicitly tested such hypotheses in order to reconstruct a robust biogeographical history of Testudines. We scanned publicly available databases for nucleotide sequences and composed a dataset comprising 13 loci for 294 living species of Testudines, which accounts for all living genera and 85% of their extant species diversity. Phylogenetic relationships and species divergence times were estimated using a thorough evaluation of fossil information as calibration priors. We then carried out the analysis of historical biogeography of Testudines in a fully statistical framework. Our study recovered the first large-scale phylogeny of turtles with well-supported relationships following the topology proposed by phylogenomic works. Our dating result consistently indicated that the origin of the main clades, Pleurodira and Cryptodira, occurred in the early Jurassic. The phylogenetic and historical biogeographical inferences permitted us to clarify how geological events affected the evolutionary dynamics of crown turtles. For instance, our analyses support the hypothesis that the breakup of Pangaea would have driven the divergence between the cryptodiran and pleurodiran lineages. The reticulated pattern in the ancestral distribution of the cryptodiran lineage suggests a complex biogeographic history for the clade, which was supposedly related to the complex paleogeographic history of Laurasia. On the other hand, the biogeographical history of Pleurodira indicated a tight correlation with the paleogeography of the Gondwanan landmasses.
publishDate 2017
dc.date.none.fl_str_mv 2017-08
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/41137
Pereira, Anieli G.; Sterli, Juliana; Moreira, Filipe R.R.; Schrago, Carlos G.; Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles; Academic Press Inc Elsevier Science; Molecular Phylogenetics and Evolution; 113; 8-2017; 59-66
1055-7903
CONICET Digital
CONICET
url http://hdl.handle.net/11336/41137
identifier_str_mv Pereira, Anieli G.; Sterli, Juliana; Moreira, Filipe R.R.; Schrago, Carlos G.; Multilocus phylogeny and statistical biogeography clarify the evolutionary history of major lineages of turtles; Academic Press Inc Elsevier Science; Molecular Phylogenetics and Evolution; 113; 8-2017; 59-66
1055-7903
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1016/j.ympev.2017.05.008
info:eu-repo/semantics/altIdentifier/url/https://www.sciencedirect.com/science/article/pii/S1055790316304316
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Academic Press Inc Elsevier Science
publisher.none.fl_str_mv Academic Press Inc Elsevier Science
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
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