The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses

Autores
Perez, Sergio Ivan; Rosenberger, Alfred L.
Año de publicación
2014
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
Phylogenetic or species trees reflect the branching process of lineages and have direct and indirect interest for several branches of evolutionary anthropology. Estimating phylogenetic trees is a necessary first step toward understanding the factors responsible for the ecological and phenotypic diversification of a primate clade. The platyrrhines have become well known as a phylogenetic challenge. Since the 1990s, platyrrhine phylogenetic studies have increasingly analyzed DNA sequences, or other molecular datasets. Several researchers have claimed with confidence that platyrrhine phylogenetic history has been ‘resolved’ using these molecular data, but the concordance among these studies has never been quantified. Here, we perform a meta-analysis of published platyrrhine trees using topological information and multivariate methods. Specifically, we examine the claim that platyrrhine phylogeny has been determined and explore the relationships between phylogenies and dataset types used for phylogenetic inference (nuclear DNA, mtDNA, Alu sequences, morphology or mixed data). We compare topologies summarizing 31 major neontological studies of the platyrrhines produced since 1975. The analysis reveals that major disparities are rather common among the hypotheses regarding the higher-level relationships of platyrrhines. We also find that the global concordance that appears to emerge at the generic level is less impressive when one looks more finely at particular relationships. Moreover, correspondence among trees appears to be related to the ‘type’ of dataset analyzed, which suggests that the biological properties of distinct datasets have an inherent influence on the likelihood of producing similar reconstructions of phylogenetic relationships. This serves to remind us that the main questions surrounding the phylogeny reconstruction program begin with experimental design, for both molecular and morphological datasets. Thus, previous claims that platyrrhine genus-level topology have been ‘resolved’, or that calibrated molecular trees are sufficiently accurate representations of phylogenetic history that they overpower morphological interpretations of fossils, must be considered premature.
Fil: Perez, Sergio Ivan. Universidad Nacional de la Plata. Facultad de Ciencias Naturales y Museo. Departamento Científico de Antropología; Argentina
Fil: Rosenberger, Alfred L.. Brooklyn College. Brooklyn; Estados Unidos
Materia
Systematics
Primate
Morphology
Molecule
Topological Congruence
Cladogram Balance
Nivel de accesibilidad
acceso abierto
Condiciones de uso
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
Repositorio
CONICET Digital (CONICET)
Institución
Consejo Nacional de Investigaciones Científicas y Técnicas
OAI Identificador
oai:ri.conicet.gov.ar:11336/32834

id CONICETDig_0c9156950e584ab9187b350d202d4fd1
oai_identifier_str oai:ri.conicet.gov.ar:11336/32834
network_acronym_str CONICETDig
repository_id_str 3498
network_name_str CONICET Digital (CONICET)
spelling The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypothesesPerez, Sergio IvanRosenberger, Alfred L.SystematicsPrimateMorphologyMoleculeTopological CongruenceCladogram Balancehttps://purl.org/becyt/ford/1.6https://purl.org/becyt/ford/1Phylogenetic or species trees reflect the branching process of lineages and have direct and indirect interest for several branches of evolutionary anthropology. Estimating phylogenetic trees is a necessary first step toward understanding the factors responsible for the ecological and phenotypic diversification of a primate clade. The platyrrhines have become well known as a phylogenetic challenge. Since the 1990s, platyrrhine phylogenetic studies have increasingly analyzed DNA sequences, or other molecular datasets. Several researchers have claimed with confidence that platyrrhine phylogenetic history has been ‘resolved’ using these molecular data, but the concordance among these studies has never been quantified. Here, we perform a meta-analysis of published platyrrhine trees using topological information and multivariate methods. Specifically, we examine the claim that platyrrhine phylogeny has been determined and explore the relationships between phylogenies and dataset types used for phylogenetic inference (nuclear DNA, mtDNA, Alu sequences, morphology or mixed data). We compare topologies summarizing 31 major neontological studies of the platyrrhines produced since 1975. The analysis reveals that major disparities are rather common among the hypotheses regarding the higher-level relationships of platyrrhines. We also find that the global concordance that appears to emerge at the generic level is less impressive when one looks more finely at particular relationships. Moreover, correspondence among trees appears to be related to the ‘type’ of dataset analyzed, which suggests that the biological properties of distinct datasets have an inherent influence on the likelihood of producing similar reconstructions of phylogenetic relationships. This serves to remind us that the main questions surrounding the phylogeny reconstruction program begin with experimental design, for both molecular and morphological datasets. Thus, previous claims that platyrrhine genus-level topology have been ‘resolved’, or that calibrated molecular trees are sufficiently accurate representations of phylogenetic history that they overpower morphological interpretations of fossils, must be considered premature.Fil: Perez, Sergio Ivan. Universidad Nacional de la Plata. Facultad de Ciencias Naturales y Museo. Departamento Científico de Antropología; ArgentinaFil: Rosenberger, Alfred L.. Brooklyn College. Brooklyn; Estados UnidosAcademic Press Ltd-elsevier Science Ltd2014-11info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfapplication/pdfhttp://hdl.handle.net/11336/32834Perez, Sergio Ivan; Rosenberger, Alfred L.; The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses; Academic Press Ltd-elsevier Science Ltd; Journal Of Human Evolution; 76; 11-2014; 177-1870047-2484CONICET DigitalCONICETenginfo:eu-repo/semantics/altIdentifier/doi/10.1016/j.jhevol.2014.08.009info:eu-repo/semantics/altIdentifier/url/http://www.sciencedirect.com/science/article/pii/S0047248414001870info:eu-repo/semantics/openAccesshttps://creativecommons.org/licenses/by-nc-sa/2.5/ar/reponame:CONICET Digital (CONICET)instname:Consejo Nacional de Investigaciones Científicas y Técnicas2025-10-15T14:51:09Zoai:ri.conicet.gov.ar:11336/32834instacron:CONICETInstitucionalhttp://ri.conicet.gov.ar/Organismo científico-tecnológicoNo correspondehttp://ri.conicet.gov.ar/oai/requestdasensio@conicet.gov.ar; lcarlino@conicet.gov.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:34982025-10-15 14:51:09.398CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicasfalse
dc.title.none.fl_str_mv The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses
title The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses
spellingShingle The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses
Perez, Sergio Ivan
Systematics
Primate
Morphology
Molecule
Topological Congruence
Cladogram Balance
title_short The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses
title_full The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses
title_fullStr The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses
title_full_unstemmed The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses
title_sort The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses
dc.creator.none.fl_str_mv Perez, Sergio Ivan
Rosenberger, Alfred L.
author Perez, Sergio Ivan
author_facet Perez, Sergio Ivan
Rosenberger, Alfred L.
author_role author
author2 Rosenberger, Alfred L.
author2_role author
dc.subject.none.fl_str_mv Systematics
Primate
Morphology
Molecule
Topological Congruence
Cladogram Balance
topic Systematics
Primate
Morphology
Molecule
Topological Congruence
Cladogram Balance
purl_subject.fl_str_mv https://purl.org/becyt/ford/1.6
https://purl.org/becyt/ford/1
dc.description.none.fl_txt_mv Phylogenetic or species trees reflect the branching process of lineages and have direct and indirect interest for several branches of evolutionary anthropology. Estimating phylogenetic trees is a necessary first step toward understanding the factors responsible for the ecological and phenotypic diversification of a primate clade. The platyrrhines have become well known as a phylogenetic challenge. Since the 1990s, platyrrhine phylogenetic studies have increasingly analyzed DNA sequences, or other molecular datasets. Several researchers have claimed with confidence that platyrrhine phylogenetic history has been ‘resolved’ using these molecular data, but the concordance among these studies has never been quantified. Here, we perform a meta-analysis of published platyrrhine trees using topological information and multivariate methods. Specifically, we examine the claim that platyrrhine phylogeny has been determined and explore the relationships between phylogenies and dataset types used for phylogenetic inference (nuclear DNA, mtDNA, Alu sequences, morphology or mixed data). We compare topologies summarizing 31 major neontological studies of the platyrrhines produced since 1975. The analysis reveals that major disparities are rather common among the hypotheses regarding the higher-level relationships of platyrrhines. We also find that the global concordance that appears to emerge at the generic level is less impressive when one looks more finely at particular relationships. Moreover, correspondence among trees appears to be related to the ‘type’ of dataset analyzed, which suggests that the biological properties of distinct datasets have an inherent influence on the likelihood of producing similar reconstructions of phylogenetic relationships. This serves to remind us that the main questions surrounding the phylogeny reconstruction program begin with experimental design, for both molecular and morphological datasets. Thus, previous claims that platyrrhine genus-level topology have been ‘resolved’, or that calibrated molecular trees are sufficiently accurate representations of phylogenetic history that they overpower morphological interpretations of fossils, must be considered premature.
Fil: Perez, Sergio Ivan. Universidad Nacional de la Plata. Facultad de Ciencias Naturales y Museo. Departamento Científico de Antropología; Argentina
Fil: Rosenberger, Alfred L.. Brooklyn College. Brooklyn; Estados Unidos
description Phylogenetic or species trees reflect the branching process of lineages and have direct and indirect interest for several branches of evolutionary anthropology. Estimating phylogenetic trees is a necessary first step toward understanding the factors responsible for the ecological and phenotypic diversification of a primate clade. The platyrrhines have become well known as a phylogenetic challenge. Since the 1990s, platyrrhine phylogenetic studies have increasingly analyzed DNA sequences, or other molecular datasets. Several researchers have claimed with confidence that platyrrhine phylogenetic history has been ‘resolved’ using these molecular data, but the concordance among these studies has never been quantified. Here, we perform a meta-analysis of published platyrrhine trees using topological information and multivariate methods. Specifically, we examine the claim that platyrrhine phylogeny has been determined and explore the relationships between phylogenies and dataset types used for phylogenetic inference (nuclear DNA, mtDNA, Alu sequences, morphology or mixed data). We compare topologies summarizing 31 major neontological studies of the platyrrhines produced since 1975. The analysis reveals that major disparities are rather common among the hypotheses regarding the higher-level relationships of platyrrhines. We also find that the global concordance that appears to emerge at the generic level is less impressive when one looks more finely at particular relationships. Moreover, correspondence among trees appears to be related to the ‘type’ of dataset analyzed, which suggests that the biological properties of distinct datasets have an inherent influence on the likelihood of producing similar reconstructions of phylogenetic relationships. This serves to remind us that the main questions surrounding the phylogeny reconstruction program begin with experimental design, for both molecular and morphological datasets. Thus, previous claims that platyrrhine genus-level topology have been ‘resolved’, or that calibrated molecular trees are sufficiently accurate representations of phylogenetic history that they overpower morphological interpretations of fossils, must be considered premature.
publishDate 2014
dc.date.none.fl_str_mv 2014-11
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv http://hdl.handle.net/11336/32834
Perez, Sergio Ivan; Rosenberger, Alfred L.; The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses; Academic Press Ltd-elsevier Science Ltd; Journal Of Human Evolution; 76; 11-2014; 177-187
0047-2484
CONICET Digital
CONICET
url http://hdl.handle.net/11336/32834
identifier_str_mv Perez, Sergio Ivan; Rosenberger, Alfred L.; The status of platyrrhine phylogeny: A meta-analysis and quantitative appraisal of topological hypotheses; Academic Press Ltd-elsevier Science Ltd; Journal Of Human Evolution; 76; 11-2014; 177-187
0047-2484
CONICET Digital
CONICET
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1016/j.jhevol.2014.08.009
info:eu-repo/semantics/altIdentifier/url/http://www.sciencedirect.com/science/article/pii/S0047248414001870
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
eu_rights_str_mv openAccess
rights_invalid_str_mv https://creativecommons.org/licenses/by-nc-sa/2.5/ar/
dc.format.none.fl_str_mv application/pdf
application/pdf
dc.publisher.none.fl_str_mv Academic Press Ltd-elsevier Science Ltd
publisher.none.fl_str_mv Academic Press Ltd-elsevier Science Ltd
dc.source.none.fl_str_mv reponame:CONICET Digital (CONICET)
instname:Consejo Nacional de Investigaciones Científicas y Técnicas
reponame_str CONICET Digital (CONICET)
collection CONICET Digital (CONICET)
instname_str Consejo Nacional de Investigaciones Científicas y Técnicas
repository.name.fl_str_mv CONICET Digital (CONICET) - Consejo Nacional de Investigaciones Científicas y Técnicas
repository.mail.fl_str_mv dasensio@conicet.gov.ar; lcarlino@conicet.gov.ar
_version_ 1846083036989358080
score 13.22299