Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbons

Autores
Nisenbaum, Melina; Bouchet, Agustina; Guzmán, Marcelo Nicolás; González, Jorge Froilán; Sendra, Gonzalo Hernán; Pastore, Juan Ignacio; Trivi, Marcelo Ricardo; Murialdo, Silvia Elena
Año de publicación
2014
Idioma
inglés
Tipo de recurso
artículo
Estado
versión publicada
Descripción
The movement of the microorganisms towards a higher concentration of the chemical attractant is called positive chemotaxis and is involved in the efficiency of chemical degradation. Several studies are focused in this field related to genomics, and towards demonstrating chemotactic responses by bacteria, but there is little information related to the activity and morphology of their response. In this work, we use a recently reported dynamic speckle laser method, to process images and to distinguish motile surface patterns per area of colonisation by applying image processing techniques called fuzzy mathematical morphology (FMM). The images of bacterial colonies are usually surfaced, with vague edges and non-homogeneous grey levels. Hence, conventional image processing methods for shape analysis cannot be applied in these cases. In this paper, we propose the application FMM to solve this problem. The approach given was effective to segment, detect and also to describe colonisation patterns.
Materia
Bioquímica y Biología Molecular
dynamic laser speckle
FMM
fuzzy mathematical morphology
Biodegradación Ambiental
Pseudomonas
Hidrocarburos
Ambiente
Quimiotaxis
Nivel de accesibilidad
acceso abierto
Condiciones de uso
http://creativecommons.org/licenses/by-nc-nd/4.0/
Repositorio
CIC Digital (CICBA)
Institución
Comisión de Investigaciones Científicas de la Provincia de Buenos Aires
OAI Identificador
oai:digital.cic.gba.gob.ar:11746/4076

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oai_identifier_str oai:digital.cic.gba.gob.ar:11746/4076
network_acronym_str CICBA
repository_id_str 9441
network_name_str CIC Digital (CICBA)
spelling Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbonsNisenbaum, MelinaBouchet, AgustinaGuzmán, Marcelo NicolásGonzález, Jorge FroilánSendra, Gonzalo HernánPastore, Juan IgnacioTrivi, Marcelo RicardoMurialdo, Silvia ElenaBioquímica y Biología Moleculardynamic laser speckleFMMfuzzy mathematical morphologyBiodegradación AmbientalPseudomonasHidrocarburosAmbienteQuimiotaxisThe movement of the microorganisms towards a higher concentration of the chemical attractant is called positive chemotaxis and is involved in the efficiency of chemical degradation. Several studies are focused in this field related to genomics, and towards demonstrating chemotactic responses by bacteria, but there is little information related to the activity and morphology of their response. In this work, we use a recently reported dynamic speckle laser method, to process images and to distinguish motile surface patterns per area of colonisation by applying image processing techniques called fuzzy mathematical morphology (FMM). The images of bacterial colonies are usually surfaced, with vague edges and non-homogeneous grey levels. Hence, conventional image processing methods for shape analysis cannot be applied in these cases. In this paper, we propose the application FMM to solve this problem. The approach given was effective to segment, detect and also to describe colonisation patterns.2014info:eu-repo/semantics/articleinfo:eu-repo/semantics/publishedVersionhttp://purl.org/coar/resource_type/c_6501info:ar-repo/semantics/articuloapplication/pdfhttps://digital.cic.gba.gob.ar/handle/11746/4076enginfo:eu-repo/semantics/altIdentifier/doi/10.1504/IJENVH.2014.060121info:eu-repo/semantics/openAccesshttp://creativecommons.org/licenses/by-nc-nd/4.0/reponame:CIC Digital (CICBA)instname:Comisión de Investigaciones Científicas de la Provincia de Buenos Airesinstacron:CICBA2025-09-29T13:40:19Zoai:digital.cic.gba.gob.ar:11746/4076Institucionalhttp://digital.cic.gba.gob.arOrganismo científico-tecnológicoNo correspondehttp://digital.cic.gba.gob.ar/oai/snrdmarisa.degiusti@sedici.unlp.edu.arArgentinaNo correspondeNo correspondeNo correspondeopendoar:94412025-09-29 13:40:19.768CIC Digital (CICBA) - Comisión de Investigaciones Científicas de la Provincia de Buenos Airesfalse
dc.title.none.fl_str_mv Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbons
title Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbons
spellingShingle Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbons
Nisenbaum, Melina
Bioquímica y Biología Molecular
dynamic laser speckle
FMM
fuzzy mathematical morphology
Biodegradación Ambiental
Pseudomonas
Hidrocarburos
Ambiente
Quimiotaxis
title_short Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbons
title_full Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbons
title_fullStr Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbons
title_full_unstemmed Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbons
title_sort Dynamic laser speckle and fuzzy mathematical morphology applied to studies of chemotaxis towards hydrocarbons
dc.creator.none.fl_str_mv Nisenbaum, Melina
Bouchet, Agustina
Guzmán, Marcelo Nicolás
González, Jorge Froilán
Sendra, Gonzalo Hernán
Pastore, Juan Ignacio
Trivi, Marcelo Ricardo
Murialdo, Silvia Elena
author Nisenbaum, Melina
author_facet Nisenbaum, Melina
Bouchet, Agustina
Guzmán, Marcelo Nicolás
González, Jorge Froilán
Sendra, Gonzalo Hernán
Pastore, Juan Ignacio
Trivi, Marcelo Ricardo
Murialdo, Silvia Elena
author_role author
author2 Bouchet, Agustina
Guzmán, Marcelo Nicolás
González, Jorge Froilán
Sendra, Gonzalo Hernán
Pastore, Juan Ignacio
Trivi, Marcelo Ricardo
Murialdo, Silvia Elena
author2_role author
author
author
author
author
author
author
dc.subject.none.fl_str_mv Bioquímica y Biología Molecular
dynamic laser speckle
FMM
fuzzy mathematical morphology
Biodegradación Ambiental
Pseudomonas
Hidrocarburos
Ambiente
Quimiotaxis
topic Bioquímica y Biología Molecular
dynamic laser speckle
FMM
fuzzy mathematical morphology
Biodegradación Ambiental
Pseudomonas
Hidrocarburos
Ambiente
Quimiotaxis
dc.description.none.fl_txt_mv The movement of the microorganisms towards a higher concentration of the chemical attractant is called positive chemotaxis and is involved in the efficiency of chemical degradation. Several studies are focused in this field related to genomics, and towards demonstrating chemotactic responses by bacteria, but there is little information related to the activity and morphology of their response. In this work, we use a recently reported dynamic speckle laser method, to process images and to distinguish motile surface patterns per area of colonisation by applying image processing techniques called fuzzy mathematical morphology (FMM). The images of bacterial colonies are usually surfaced, with vague edges and non-homogeneous grey levels. Hence, conventional image processing methods for shape analysis cannot be applied in these cases. In this paper, we propose the application FMM to solve this problem. The approach given was effective to segment, detect and also to describe colonisation patterns.
description The movement of the microorganisms towards a higher concentration of the chemical attractant is called positive chemotaxis and is involved in the efficiency of chemical degradation. Several studies are focused in this field related to genomics, and towards demonstrating chemotactic responses by bacteria, but there is little information related to the activity and morphology of their response. In this work, we use a recently reported dynamic speckle laser method, to process images and to distinguish motile surface patterns per area of colonisation by applying image processing techniques called fuzzy mathematical morphology (FMM). The images of bacterial colonies are usually surfaced, with vague edges and non-homogeneous grey levels. Hence, conventional image processing methods for shape analysis cannot be applied in these cases. In this paper, we propose the application FMM to solve this problem. The approach given was effective to segment, detect and also to describe colonisation patterns.
publishDate 2014
dc.date.none.fl_str_mv 2014
dc.type.none.fl_str_mv info:eu-repo/semantics/article
info:eu-repo/semantics/publishedVersion
http://purl.org/coar/resource_type/c_6501
info:ar-repo/semantics/articulo
format article
status_str publishedVersion
dc.identifier.none.fl_str_mv https://digital.cic.gba.gob.ar/handle/11746/4076
url https://digital.cic.gba.gob.ar/handle/11746/4076
dc.language.none.fl_str_mv eng
language eng
dc.relation.none.fl_str_mv info:eu-repo/semantics/altIdentifier/doi/10.1504/IJENVH.2014.060121
dc.rights.none.fl_str_mv info:eu-repo/semantics/openAccess
http://creativecommons.org/licenses/by-nc-nd/4.0/
eu_rights_str_mv openAccess
rights_invalid_str_mv http://creativecommons.org/licenses/by-nc-nd/4.0/
dc.format.none.fl_str_mv application/pdf
dc.source.none.fl_str_mv reponame:CIC Digital (CICBA)
instname:Comisión de Investigaciones Científicas de la Provincia de Buenos Aires
instacron:CICBA
reponame_str CIC Digital (CICBA)
collection CIC Digital (CICBA)
instname_str Comisión de Investigaciones Científicas de la Provincia de Buenos Aires
instacron_str CICBA
institution CICBA
repository.name.fl_str_mv CIC Digital (CICBA) - Comisión de Investigaciones Científicas de la Provincia de Buenos Aires
repository.mail.fl_str_mv marisa.degiusti@sedici.unlp.edu.ar
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